Non-Coding RNA Search

Ss1.1-rcbr0_014331.5

Sequence:


               
               CAGTTCTTGCATGTTTTTCTTCTTCTCAAGCCCAGTTTAAATTGCAACTCTATTTGGGGT
ATTTTTAATTTTGATTTTGAAAAATATTAATGCAAAAGGAATTATTTATGTATATAAATC
ATGGAAGCAAATTACAGTATCTGTCAGATGGTTTGATAGGATTTAATGGAGTAGTGAAAT
CTTTGAGAATATTCACTCAGTGAATATATGTGATAACATCTTCACATTTTGAAAAATGTG
TCACTTACCCCTTCAGATATGTGATGCGCATTATTTCTGTTCATGATACTTTCATTGTGC
CTAAATCAAGGTATTATTTTGCTGAAAAGAGAAGGTAATCGCTTATTAAATGCACCGGGT
TGTAGAGAGTAAAAGATGGTTTACCCACGTGACCTTGACTGTCAAGACCCGGTCCCCACG
TGGGACGTTTAACCTTGGCTCATTGTCCATCTAGAACGCAAATGTCTTCTTAGTTCATGA
TTTAGCAAATACTCTTCTTCCACAATGAAAATGATCATTTTCCCATCTATTTTGTTTTTT
CAAGTGACACTTTCCACAGAATTAAAAAAAAAAAAAATGCATCCATATTCAGAGGGTAGG
GAAGAGACTTTCTGTTTCAAACCCTGTCCACCTGTCATCAGCACAAGAGAATCAGCACTT
CCGTGGGAACGAATGAGGTTGTACTAAAGTGAAATGCATTGTTTTTTCTCGTTTTTAGCA
GAAGACCCTGCGCACATTTACTCACTCACTGTACTCCTGCTCCAGAGATGCAGATTCGGT
GTCCGCCACGCTCGTCACTTTATTTATTTATTGTTTTTTACCATCCATGTACATTCCTTT
CACATGGGTAGAATCGTAGTTCTTGAAGTTCATTGTTTTTGTTTTGATGTTTGAATACTA
TTTAATATTGGGCTTTAATATTGCTGGATTTGCTCCCTTTGGTTACTTGTGCAGTGTTAA
AAGTAATTCACACTCTTGTTTAATATACCAGATATTCTAGCAAAAGCCGCTTTGAAAAAT
TGTAGCTGTTTATTTGACTGTACTGAATTACGACCTTAAGGTCTCGTATTGTACAACAGT
TAACTTTTTCTTTTTGCTTTTCAGTAATATGTTCACTTACCAAAATATGAACTTTAGGAT
GCACTAAAATTTTGTTTTAGCAGTGGCTCAAAATAAACATTTCAGAAATTAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGTTCTTGCATGTTTTTCTTCTTCTCAAGCCCAGTTTAAATTGCAACTCTATTTGGGGT
ATTTTTAATTTTGATTTTGAAAAATATTAATGCAAAAGGAATTATTTATGTATATAAATC
ATGGAAGCAAATTACAGTATCTGTCAGATGGTTTGATAGGATTTAATGGAGTAGTGAAAT
CTTTGAGAATATTCACTCAGTGAATATATGTGATAACATCTTCACATTTTGAAAAATGTG
TCACTTACCCCTTCAGATATGTGATGCGCATTATTTCTGTTCATGATACTTTCATTGTGC
CTAAATCAAGGTATTATTTTGCTGAAAAGAGAAGGTAATCGCTTATTAAATGCACCGGGT
TGTAGAGAGTAAAAGATGGTTTACCCACGTGACCTTGACTGTCAAGACCCGGTCCCCACG
TGGGACGTTTAACCTTGGCTCATTGTCCATCTAGAACGCAAATGTCTTCTTAGTTCATGA
TTTAGCAAATACTCTTCTTCCACAATGAAAATGATCATTTTCCCATCTATTTTGTTTTTT
CAAGTGACACTTTCCACAGAATTAAAAAAAAAAAAAATGCATCCATATTCAGAGGGTAGG
GAAGAGACTTTCTGTTTCAAACCCTGTCCACCTGTCATCAGCACAAGAGAATCAGCACTT
CCGTGGGAACGAATGAGGTTGTACTAAAGTGAAATGCATTGTTTTTTCTCGTTTTTAGCA
GAAGACCCTGCGCACATTTACTCACTCACTGTACTCCTGCTCCAGAGATGCAGATTCGGT
GTCCGCCACGCTCGTCACTTTATTTATTTATTGTTTTTTACCATCCATGTACATTCCTTT
CACATGGGTAGAATCGTAGTTCTTGAAGTTCATTGTTTTTGTTTTGATGTTTGAATACTA
TTTAATATTGGGCTTTAATATTGCTGGATTTGCTCCCTTTGGTTACTTGTGCAGTGTTAA
AAGTAATTCACACTCTTGTTTAATATACCAGATATTCTAGCAAAAGCCGCTTTGAAAAAT
TGTAGCTGTTTATTTGACTGTACTGAATTACGACCTTAAGGTCTCGTATTGTACAACAGT
TAACTTTTTCTTTTTGCTTTTCAGTAATATGTTCACTTACCAAAATATGAACTTTAGGAT
GCACTAAAATTTTGTTTTAGCAGTGGCTCAAAATAAACATTTCAGAAATTAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               17-1191, gnl|bosTau2|chr12 (3832165-3833344)
               

               
               17-1191, gnl|Hg17|chr13 (41794105-41795294)
               

               
               17-1191, gnl|Mm7|chr14 (73174060-73173044)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-1191, gnl|bosTau2|chr12 (3832165-3833344)
               

               
               17-1191, gnl|Hg17|chr13 (41794105-41795294)
               

               
               17-1191, gnl|Mm7|chr14 (73174060-73173044)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               cbr (8.44638)
               

               
               fco (1.57208)
               

               
               mgp (0.692042)
               

               
               ski (0.586941)
               

               
               rec (0.519211)
               

               
               csk (0.422238)
               

               
               aor (0.390549)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (8.44638)
               

               
               fco (1.57208)
               

               
               mgp (0.692042)
               

               
               ski (0.586941)
               

               
               rec (0.519211)
               

               
               csk (0.422238)
               

               
               aor (0.390549)
               

               
               mga (0.32041)
               

               
               cte (0.29274)
               

               
               liv (0.292569)
               

               
               hyp (0.285673)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               ece (0.229305)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	17-1191, gnl\|bosTau2\|chr12 (3832165-3833344)
	17-1191, gnl\|Hg17\|chr13 (41794105-41795294)
	17-1191, gnl\|Mm7\|chr14 (73174060-73173044)

	cbr (8.44638)
	fco (1.57208)
	mgp (0.692042)
	ski (0.586941)
	rec (0.519211)
	csk (0.422238)
	aor (0.390549)
	mga (0.32041)
	cte (0.29274)
	liv (0.292569)
	hyp (0.285673)
	ret (0.257467)
	sug (0.254582)
	tra (0.246184)
	cbe (0.239234)
	ece (0.229305)
	fcc (0.197785)
	fbs (0.175346)
	sin (0.174948)
	fhi (0.169578)
	lin (0.145603)
	pty (0.142714)
	lnt (0.142308)
	lyg (0.133103)
	ese (0.126502)
	spc (0.113366)
	cty (0.10408)