Non-Coding RNA Search

Ss1.1-rcbr0_014352.5

Sequence:


               
               AATTCCCCAATGACCAGGTTCGCAGCCAGGCCAGACTGCGGGTCCAAGTACCAGCTGTGT
GTTCAGCTCCTGTCGTCAGCGCATGCGCCTCTGGGGACCTTCCAGCCAGACCCAGCAATG
ATCCAGCAGAAGAGCGATGCCAAGTGGAGGGAGGTCTCCCACACGTTCTCCAACTATCCG
CCCGGCGTCCGCTACATCTGGTTTCAGCACGGCGGCGTGGACACTCACTACTGGGCCGGC
TGGTACGGCCCGAGGGTCACCAACAGCAGCATCACCATCGGGCCCCCACTGCCGTGACGC
CCCCAGGCCCCCAGCCACCTAACCCCAACTGGTAAACTGCTGGTAGAGAAGGGCTGGGCT
TGGGAAGGGGAGGTGGGGGCCAGGCTCCCCTAGACTTCCTAGTTCATCCTTGCCCCCCTG
CCCCCAGCTGCCTCTCTGTGGCACCTCTTACTTTGGGCCACCTTTGTATGTTATTGTGGC
TAGCTCTCTGCCTGGGGCTCTCAACCTGAATGATAGGGCTCCTGAGGTTAGGGGGGTACA
GGGCGTTCCCCCAGGCTCCTCCCCCAGATGCCTCTGACGGAGGGTCTCCAAGCTCCACTG
GCAACCAGTGTCCCTTCCTGGGCCTTTTCTCACTGTCCTCTTTGAGGGCCTTTCAAGCAG
GGACAGTCGAGACACCGGGTAAGCCCACGGCTCCCCTGCACGGCTGCCCTCCCAGATGCT
AGGAGGTGAGCACGTAGCTCAGATGGGTCTGGGAGTGGAAGGAGGGCTCTGCCGGCCCAT
CCTCTGCCCCATTCTTTGCCACTCTCAAGCTCCCTGGCTCTGCCCACATGCTCAGAGAGG
TAGTTTTGGCCCAGAAGTTCAGGCCTGATCCTGAGATAGGCAGGCCTCGGGTGGGGTGGG
GTCCTGGCCGGGTCTGGACTGGCCTTACTGTCCATGAAGTTCCAGAAGCCACATGGGTAG
GAAATGAGGGCAGGGGTCTCCAAATGACACCCCTGGGATCCTGTGCACGGTAACCCAGGG
CAGGAAGGGGGCAGGATTGGACCCTGAGAGCTGGGATGTGTGAGCCCTGGATAAGTGGGG
GGGAGAGGGCGCAGGTTAAGGACCATTTGTCCACCTGCATGCCTAGGCCAGGCCCCCAAC
CTACCCTCGGAACTGCCGTTCCCAGGACCTCCCCACCCTGTCCGACCATGTTCCTGCCTC
TCCCTCCTGCTGGAAGGACAGAGTGCTCTGATCCTACCCCTGCTGCATGTGGCCAAATAA
AAGGTCTTCCCAGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCCCCAATGACCAGGTTCGCAGCCAGGCCAGACTGCGGGTCCAAGTACCAGCTGTGT
GTTCAGCTCCTGTCGTCAGCGCATGCGCCTCTGGGGACCTTCCAGCCAGACCCAGCAATG
ATCCAGCAGAAGAGCGATGCCAAGTGGAGGGAGGTCTCCCACACGTTCTCCAACTATCCG
CCCGGCGTCCGCTACATCTGGTTTCAGCACGGCGGCGTGGACACTCACTACTGGGCCGGC
TGGTACGGCCCGAGGGTCACCAACAGCAGCATCACCATCGGGCCCCCACTGCCGTGACGC
CCCCAGGCCCCCAGCCACCTAACCCCAACTGGTAAACTGCTGGTAGAGAAGGGCTGGGCT
TGGGAAGGGGAGGTGGGGGCCAGGCTCCCCTAGACTTCCTAGTTCATCCTTGCCCCCCTG
CCCCCAGCTGCCTCTCTGTGGCACCTCTTACTTTGGGCCACCTTTGTATGTTATTGTGGC
TAGCTCTCTGCCTGGGGCTCTCAACCTGAATGATAGGGCTCCTGAGGTTAGGGGGGTACA
GGGCGTTCCCCCAGGCTCCTCCCCCAGATGCCTCTGACGGAGGGTCTCCAAGCTCCACTG
GCAACCAGTGTCCCTTCCTGGGCCTTTTCTCACTGTCCTCTTTGAGGGCCTTTCAAGCAG
GGACAGTCGAGACACCGGGTAAGCCCACGGCTCCCCTGCACGGCTGCCCTCCCAGATGCT
AGGAGGTGAGCACGTAGCTCAGATGGGTCTGGGAGTGGAAGGAGGGCTCTGCCGGCCCAT
CCTCTGCCCCATTCTTTGCCACTCTCAAGCTCCCTGGCTCTGCCCACATGCTCAGAGAGG
TAGTTTTGGCCCAGAAGTTCAGGCCTGATCCTGAGATAGGCAGGCCTCGGGTGGGGTGGG
GTCCTGGCCGGGTCTGGACTGGCCTTACTGTCCATGAAGTTCCAGAAGCCACATGGGTAG
GAAATGAGGGCAGGGGTCTCCAAATGACACCCCTGGGATCCTGTGCACGGTAACCCAGGG
CAGGAAGGGGGCAGGATTGGACCCTGAGAGCTGGGATGTGTGAGCCCTGGATAAGTGGGG
GGGAGAGGGCGCAGGTTAAGGACCATTTGTCCACCTGCATGCCTAGGCCAGGCCCCCAAC
CTACCCTCGGAACTGCCGTTCCCAGGACCTCCCCACCCTGTCCGACCATGTTCCTGCCTC
TCCCTCCTGCTGGAAGGACAGAGTGCTCTGATCCTACCCCTGCTGCATGTGGCCAAATAA
AAGGTCTTCCCAGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61865338|ref|XP_590639.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61865338|ref|XP_590639.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               595-698, - strand, RNAz p=0.982214
               

               
               937-1128, - strand, RNAz p=0.963519
               

               
               977-1116, - strand, RNAz p=0.948488

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               595-698, - strand, RNAz p=0.982214
               

               
               937-1128, - strand, RNAz p=0.963519
               

               
               977-1116, - strand, RNAz p=0.948488

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               15-155, gnl|bosTau2|chr16 (21665553-21665413)
               

               
               15-155, gnl|Hg17|chr1 (11653056-11653196)
               

               
               15-155, gnl|Mm7|chr4 (147145826-147145686)
               


               
               356-1133, gnl|bosTau2|chr16 (21664583-21663802)
               

               
               356-1133, gnl|canFam2|chr2 (87442223-87441574)
               

               
               356-1133, gnl|hg17|chr1 (11655707-11656411)
               

               
               356-1133, gnl|Hg17|chr1 (11655706-11656434)
               

               
               356-1133, gnl|mm7|chr4 (147142943-147142477)
               

               
               356-1133, gnl|oryCun1|scaffold_145340 (4568-4032)
               

               
               356-1133, gnl|panTro1|chr1 (11870566-11871270)
               

               
               356-1133, gnl|rheMac2|chr1 (14758259-14758958)
               

               
               356-1133, gnl|rn3|chr5 (165240326-165239815)
               


               
               1153-1293, gnl|bosTau2|chr1 (34244605-34244464)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-155, gnl|bosTau2|chr16 (21665553-21665413)
               

               
               15-155, gnl|Hg17|chr1 (11653056-11653196)
               

               
               15-155, gnl|Mm7|chr4 (147145826-147145686)
               


               
               356-1133, gnl|bosTau2|chr16 (21664583-21663802)
               

               
               356-1133, gnl|canFam2|chr2 (87442223-87441574)
               

               
               356-1133, gnl|hg17|chr1 (11655707-11656411)
               

               
               356-1133, gnl|Hg17|chr1 (11655706-11656434)
               

               
               356-1133, gnl|mm7|chr4 (147142943-147142477)
               

               
               356-1133, gnl|oryCun1|scaffold_145340 (4568-4032)
               

               
               356-1133, gnl|panTro1|chr1 (11870566-11871270)
               

               
               356-1133, gnl|rheMac2|chr1 (14758259-14758958)
               

               
               356-1133, gnl|rn3|chr5 (165240326-165239815)
               


               
               1153-1293, gnl|bosTau2|chr1 (34244605-34244464)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cbr (1.66368)
               

               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.66368)
               

               
               ebs (0.236602)
               

               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               ute (0.132784)
               

               
               cov (0.132153)

	595-698, - strand, RNAz p=0.982214
	937-1128, - strand, RNAz p=0.963519
	977-1116, - strand, RNAz p=0.948488

	15-155, gnl\|bosTau2\|chr16 (21665553-21665413)
	15-155, gnl\|Hg17\|chr1 (11653056-11653196)
	15-155, gnl\|Mm7\|chr4 (147145826-147145686)

	356-1133, gnl\|bosTau2\|chr16 (21664583-21663802)
	356-1133, gnl\|canFam2\|chr2 (87442223-87441574)
	356-1133, gnl\|hg17\|chr1 (11655707-11656411)
	356-1133, gnl\|Hg17\|chr1 (11655706-11656434)
	356-1133, gnl\|mm7\|chr4 (147142943-147142477)
	356-1133, gnl\|oryCun1\|scaffold_145340 (4568-4032)
	356-1133, gnl\|panTro1\|chr1 (11870566-11871270)
	356-1133, gnl\|rheMac2\|chr1 (14758259-14758958)
	356-1133, gnl\|rn3\|chr5 (165240326-165239815)

	1153-1293, gnl\|bosTau2\|chr1 (34244605-34244464)

	cbr (1.66368)
	ebs (0.236602)
	fcc (0.197785)
	fbs (0.175346)
	nco (0.161734)
	cag (0.151194)
	ute (0.132784)
	cov (0.132153)