Ss1.1-rcbr0_014543.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCTGGGCTTCATGCTTATGTTGGCTGTGCTCATGGCAGCCACACATGCTGTTTATGGCA AGCTGCTCCTATTTGAGTATCGTCACCGCAAGATGAAGCCCGTTCAGATGGTGCCAGCCA TCAGCCAGAACTGGACATTCCATGGCCCTGGTGCCACCGGCCAGGCTGCTGCCAACTGGA TCGCTGGCTTTGGCCGTGGGCCCATGCCACCAACCCTGCTGGGTATCCGGCAGAATGGGC ACGCAGCCAGCCGGCGGCTGCTGGGCATGGACGAGGTCAAGGGTGAAAAGCAGCTGGGCC GTATGTTCTACGCGATCACACTGCTCTTCCTGCTCCTCTGGTCACCCTACATTGTGGCCT GCTACTGGCGAGTGTTTGTGAAAGCCTGCGCCGTGCCCCACCGTTACCTGGCCACTGCTG TTTGGATGAGCTTCGCCCAGGCTGCCGTCAACCCCATCGTCTGCTTCCTGCTCAACAAGG ACCTCAAGAAGTGCCTGAGGACTCACGCCCCCTGCTGGGGCACAGGAGGTGCCCCGGCTC CTAGAGAACCCTACTGTGTCATGTGAAGCAGGCTGGTAGGCAGACAGGCAGGCAGAAGGT CATGGCCACAGCGATGCGGCCAACAGAAGGGGAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCTGGGCTTCATGCTTATGTTGGCTGTGCTCATGGCAGCCACACATGCTGTTTATGGCA AGCTGCTCCTATTTGAGTATCGTCACCGCAAGATGAAGCCCGTTCAGATGGTGCCAGCCA TCAGCCAGAACTGGACATTCCATGGCCCTGGTGCCACCGGCCAGGCTGCTGCCAACTGGA TCGCTGGCTTTGGCCGTGGGCCCATGCCACCAACCCTGCTGGGTATCCGGCAGAATGGGC ACGCAGCCAGCCGGCGGCTGCTGGGCATGGACGAGGTCAAGGGTGAAAAGCAGCTGGGCC GTATGTTCTACGCGATCACACTGCTCTTCCTGCTCCTCTGGTCACCCTACATTGTGGCCT GCTACTGGCGAGTGTTTGTGAAAGCCTGCGCCGTGCCCCACCGTTACCTGGCCACTGCTG TTTGGATGAGCTTCGCCCAGGCTGCCGTCAACCCCATCGTCTGCTTCCTGCTCAACAAGG ACCTCAAGAAGTGCCTGAGGACTCACGCCCCCTGCTGGGGCACAGGAGGTGCCCCGGCTC CTAGAGAACCCTACTGTGTCATGTGAAGCAGGCTGGTAGGCAGACAGGCAGGCAGAAGGT CATGGCCACAGCGATGCGGCCAACAGAAGGGGAGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 3-281, - strand, RNAz p=0.982269 | |
| 422-621, - strand, RNAz p=0.995911 | |
| 482-601, + strand, RNAz p=0.988639 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 3-281, - strand, RNAz p=0.982269 | |
| 422-621, - strand, RNAz p=0.995911 | |
| 482-601, + strand, RNAz p=0.988639 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_018969, + |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 3-636, gnl|bosTau2|chr25 (14038273-14037640) | |
| 3-636, gnl|canFam2|chrX (44854608-44855094) | |
| 3-636, gnl|danRer3|chr8 (15572814-15572328) | |
| 3-636, gnl|dasNov1|scaffold_59484 (1936-2422) | |
| 3-636, gnl|echTel1|scaffold_284351 (5066-4706) | |
| 3-636, gnl|fr1|chrUn (254045138-254044652) | |
| 3-636, gnl|galGal2|chr12 (16223100-16223586) | |
| 3-636, gnl|hg17|chrX (52989303-52989789) | |
| 3-636, gnl|Hg17|chrX (52989383-52990016) | |
| 3-636, gnl|loxAfr1|scaffold_17439 (53012-52528) | |
| 3-636, gnl|mm7|chrX (147105675-147105189) | |
| 3-636, gnl|Mm7|chrX (147105593-147104961) | |
| 3-636, gnl|monDom2|scaffold_134 (52763-52262) | |
| 3-636, gnl|oryCun1|scaffold_203137 (42663-43149) | |
| 3-636, gnl|panTro1|chrX (54231107-54231594) | |
| 3-636, gnl|rheMac2|chrX (51400049-51400535) | |
| 3-636, gnl|rn3|chrX (41900422-41899936) | |
| 3-636, gnl|tetNig1|chr9 (8949375-8949861) | |
| 3-636, gnl|xenTro1|scaffold_723 (409276-408790) | |
| 332-517, gnl|bosTau2|chr22 (23928895-23928710) | |
| 332-517, gnl|Hg17|chr3 (71886772-71886957) | |
| 332-517, gnl|Mm7|chr6 (99781646-99781831) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-636, gnl|bosTau2|chr25 (14038273-14037640) | |
| 3-636, gnl|canFam2|chrX (44854608-44855094) | |
| 3-636, gnl|danRer3|chr8 (15572814-15572328) | |
| 3-636, gnl|dasNov1|scaffold_59484 (1936-2422) | |
| 3-636, gnl|echTel1|scaffold_284351 (5066-4706) | |
| 3-636, gnl|fr1|chrUn (254045138-254044652) | |
| 3-636, gnl|galGal2|chr12 (16223100-16223586) | |
| 3-636, gnl|hg17|chrX (52989303-52989789) | |
| 3-636, gnl|Hg17|chrX (52989383-52990016) | |
| 3-636, gnl|loxAfr1|scaffold_17439 (53012-52528) | |
| 3-636, gnl|mm7|chrX (147105675-147105189) | |
| 3-636, gnl|Mm7|chrX (147105593-147104961) | |
| 3-636, gnl|monDom2|scaffold_134 (52763-52262) | |
| 3-636, gnl|oryCun1|scaffold_203137 (42663-43149) | |
| 3-636, gnl|panTro1|chrX (54231107-54231594) | |
| 3-636, gnl|rheMac2|chrX (51400049-51400535) | |
| 3-636, gnl|rn3|chrX (41900422-41899936) | |
| 3-636, gnl|tetNig1|chr9 (8949375-8949861) | |
| 3-636, gnl|xenTro1|scaffold_723 (409276-408790) | |
| 332-517, gnl|bosTau2|chr22 (23928895-23928710) | |
| 332-517, gnl|Hg17|chr3 (71886772-71886957) | |
| 332-517, gnl|Mm7|chr6 (99781646-99781831) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (2.68748) | |
| eru (0.120048) |