Ss1.1-rcbr0_015454.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGCCATCGTGTCTGGACACGTCTGTGCGACCTGCGCCGCGGTCTCTGGGCCCCCGCCA AGAACGGCCGGCGTAGCGTGGTCTCCTGCATTGATCAGTAGCCTACAACTCCCTTAGCTC AACACCGAGATCTGTAAAGTATGCTACATGTAGGACAGTTTTCTTCTCAATGTCCTAAAA CACCTCTATAGGCGGTCACCCTGTCCTAGCACTTAGAATTTGCATCCACGGGACTAAATG AAGAGCAGAAAGAATTTCAGAGAGTGGCCTTCAGCTTTGCTGCCCAGGAGATGATGCCAA ACATGGCAGAGTGGGACCAGAAGGAGCTGTTCCCAGTGGATATGATGCGGAAGGCGGCCA GACTGGGCTTTGGGGGGGTTTATGTGCGAACAGATGTAGGAGGGTCTGGATTGTCACGGC TCGATACATCTGTGATCTTTGAAGCCTTGGCCACAGGCTGCACCAGCACCACAGCCTATA TGAGCATCCACAACATGTGTGTCTGGATAATCGATGCCTTTGGAAACGAGGAGCAGAGGC ACAGGTTTTGCCCACCACTCTGTACCATGGAGAAGTTTGCTTCCTACTGTCTTACTGAAC CAGGGAGTGGGAGTGATGCTGCCTCCCTCTTGACCTCTGCTGAGCGGCAAGGAGATCACT ACATCCTCAATGGCTCCAAGGCCTTCATCAGTGGCGGCGGCGAAGCAGACATCTATGTAG TCATGTGCCGAACTGGAGGACCTGGCCATAAAGGCATCTCATGTGTAGTTGTTGAAAAGG GGACTCCTGGCCTCAGCTTTGGAAAGAAGGAGAAAAAGGTGGGGTGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGCCATCGTGTCTGGACACGTCTGTGCGACCTGCGCCGCGGTCTCTGGGCCCCCGCCA AGAACGGCCGGCGTAGCGTGGTCTCCTGCATTGATCAGTAGCCTACAACTCCCTTAGCTC AACACCGAGATCTGTAAAGTATGCTACATGTAGGACAGTTTTCTTCTCAATGTCCTAAAA CACCTCTATAGGCGGTCACCCTGTCCTAGCACTTAGAATTTGCATCCACGGGACTAAATG AAGAGCAGAAAGAATTTCAGAGAGTGGCCTTCAGCTTTGCTGCCCAGGAGATGATGCCAA ACATGGCAGAGTGGGACCAGAAGGAGCTGTTCCCAGTGGATATGATGCGGAAGGCGGCCA GACTGGGCTTTGGGGGGGTTTATGTGCGAACAGATGTAGGAGGGTCTGGATTGTCACGGC TCGATACATCTGTGATCTTTGAAGCCTTGGCCACAGGCTGCACCAGCACCACAGCCTATA TGAGCATCCACAACATGTGTGTCTGGATAATCGATGCCTTTGGAAACGAGGAGCAGAGGC ACAGGTTTTGCCCACCACTCTGTACCATGGAGAAGTTTGCTTCCTACTGTCTTACTGAAC CAGGGAGTGGGAGTGATGCTGCCTCCCTCTTGACCTCTGCTGAGCGGCAAGGAGATCACT ACATCCTCAATGGCTCCAAGGCCTTCATCAGTGGCGGCGGCGAAGCAGACATCTATGTAG TCATGTGCCGAACTGGAGGACCTGGCCATAAAGGCATCTCATGTGTAGTTGTTGAAAAGG GGACTCCTGGCCTCAGCTTTGGAAAGAAGGAGAAAAAGGTGGGGTGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 322-493, gnl|bosTau2|chr15 (53476310-53476481) | |
| 322-493, gnl|canFam2|chr5 (3988037-3987823) | |
| 322-493, gnl|danRer3|chr15 (9450003-9450184) | |
| 322-493, gnl|fr1|chrUn (15908812-15909004) | |
| 322-493, gnl|galGal2|chr24 (2495739-2495947) | |
| 322-493, gnl|hg17|chr11 (133632177-133632391) | |
| 322-493, gnl|Hg17|chr11 (133632190-133632361) | |
| 322-493, gnl|loxAfr1|scaffold_583 (83131-82917) | |
| 322-493, gnl|mm7|chr9 (26874427-26874209) | |
| 322-493, gnl|Mm7|chr9 (26874412-26874241) | |
| 322-493, gnl|monDom2|scaffold_15 (25054941-25055146) | |
| 322-493, gnl|oryCun1|scaffold_92533 (1853-2068) | |
| 322-493, gnl|panTro1|chr9 (135869026-135869240) | |
| 322-493, gnl|rheMac2|chr14 (132261177-132261391) | |
| 322-493, gnl|rn3|chr8_random (209564-209346) | |
| 322-493, gnl|tetNig1|chr16 (2842690-2842509) | |
| 322-493, gnl|xenTro1|scaffold_328 (215787-215602) | |
| 679-821, gnl|bosTau2|chr15 (53477600-53477742) | |
| 679-821, gnl|canFam2|chr5 (3985920-3985771) | |
| 679-821, gnl|danRer3|chr15 (9452974-9453123) | |
| 679-821, gnl|dasNov1|scaffold_25155 (7028-6879) | |
| 679-821, gnl|echTel1|scaffold_294554 (3931-3782) | |
| 679-821, gnl|fr1|chrUn (15909431-15909573) | |
| 679-821, gnl|galGal2|chr24 (2497402-2497547) | |
| 679-821, gnl|hg17|chr11 (133634710-133634859) | |
| 679-821, gnl|Hg17|chr11 (133634710-133634852) | |
| 679-821, gnl|loxAfr1|scaffold_583 (81386-81237) | |
| 679-821, gnl|mm7|chr9 (26868587-26868438) | |
| 679-821, gnl|Mm7|chr9 (26868585-26868443) | |
| 679-821, gnl|monDom2|scaffold_15 (25056835-25056986) | |
| 679-821, gnl|oryCun1|scaffold_176389 (47001-47150) | |
| 679-821, gnl|panTro1|chr9 (135871419-135871568) | |
| 679-821, gnl|rheMac2|chr14 (132263590-132263739) | |
| 679-821, gnl|rn3|chr8_random (203657-203508) | |
| 679-821, gnl|tetNig1|chr16 (2842103-2841961) | |
| 679-821, gnl|xenTro1|scaffold_328 (213091-212949) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 322-493, gnl|bosTau2|chr15 (53476310-53476481) | |
| 322-493, gnl|canFam2|chr5 (3988037-3987823) | |
| 322-493, gnl|danRer3|chr15 (9450003-9450184) | |
| 322-493, gnl|fr1|chrUn (15908812-15909004) | |
| 322-493, gnl|galGal2|chr24 (2495739-2495947) | |
| 322-493, gnl|hg17|chr11 (133632177-133632391) | |
| 322-493, gnl|Hg17|chr11 (133632190-133632361) | |
| 322-493, gnl|loxAfr1|scaffold_583 (83131-82917) | |
| 322-493, gnl|mm7|chr9 (26874427-26874209) | |
| 322-493, gnl|Mm7|chr9 (26874412-26874241) | |
| 322-493, gnl|monDom2|scaffold_15 (25054941-25055146) | |
| 322-493, gnl|oryCun1|scaffold_92533 (1853-2068) | |
| 322-493, gnl|panTro1|chr9 (135869026-135869240) | |
| 322-493, gnl|rheMac2|chr14 (132261177-132261391) | |
| 322-493, gnl|rn3|chr8_random (209564-209346) | |
| 322-493, gnl|tetNig1|chr16 (2842690-2842509) | |
| 322-493, gnl|xenTro1|scaffold_328 (215787-215602) | |
| 679-821, gnl|bosTau2|chr15 (53477600-53477742) | |
| 679-821, gnl|canFam2|chr5 (3985920-3985771) | |
| 679-821, gnl|danRer3|chr15 (9452974-9453123) | |
| 679-821, gnl|dasNov1|scaffold_25155 (7028-6879) | |
| 679-821, gnl|echTel1|scaffold_294554 (3931-3782) | |
| 679-821, gnl|fr1|chrUn (15909431-15909573) | |
| 679-821, gnl|galGal2|chr24 (2497402-2497547) | |
| 679-821, gnl|hg17|chr11 (133634710-133634859) | |
| 679-821, gnl|Hg17|chr11 (133634710-133634852) | |
| 679-821, gnl|loxAfr1|scaffold_583 (81386-81237) | |
| 679-821, gnl|mm7|chr9 (26868587-26868438) | |
| 679-821, gnl|Mm7|chr9 (26868585-26868443) | |
| 679-821, gnl|monDom2|scaffold_15 (25056835-25056986) | |
| 679-821, gnl|oryCun1|scaffold_176389 (47001-47150) | |
| 679-821, gnl|panTro1|chr9 (135871419-135871568) | |
| 679-821, gnl|rheMac2|chr14 (132263590-132263739) | |
| 679-821, gnl|rn3|chr8_random (203657-203508) | |
| 679-821, gnl|tetNig1|chr16 (2842103-2841961) | |
| 679-821, gnl|xenTro1|scaffold_328 (213091-212949) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cbr (4.47914) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| pty (0.142714) | |
| ebs (0.118301) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (4.47914) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| pty (0.142714) | |
| ebs (0.118301) |