Non-Coding RNA Search

Ss1.1-rcbr0_015726.5

Sequence:


               
               CCGACAACGTCCTCAAGAACAGGGGGGTGCAGACCAACATGTACGCCCGCAAGTTCCAAG
AGCGGTTCGGGAGTGACGGGGCCTGGGTGGACGTGACGCTGCCGGAGATGAAGGCCTTCC
TGGGCTACGTCATCTCCACCAGCACCTCGCACTGCGAGTCGGTCCTGAGCATCTGGAGCG
GCGGCTTCTATAGCAACCGCAGCCTGGCGCTGGTCATGAGCCAGGCCCGCTTCGAGAAGA
TCCTCAAGTACTTCCACGTCGTGGCCTTCCGCTCCAGCCAGACCACGCACGGCCTCTACA
AGGTCCAGCCCTTCCTGGACTCCCTGCAGACCAGCTTCGACTCTGCCTTCAGGCCTTCCC
AAACCCAGGTGCTACACGAACCCCTGATTGACGAGGACCCTGTGTTCATTGCCACGTGCA
CAGAGCGTGAACTTCGGAAGAGGAAAAAGCGGAAATTCAGCCTCTGGGTCAGGCAGTGCT
CGTCCACCGGCTTCATCATCCAGATTTACGTCCACCTGAAGGAAGGCAGCGGCCCTGACG
GGCTCGATGCGCTGAAGAATAAGCCGCAGCTGCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGACAACGTCCTCAAGAACAGGGGGGTGCAGACCAACATGTACGCCCGCAAGTTCCAAG
AGCGGTTCGGGAGTGACGGGGCCTGGGTGGACGTGACGCTGCCGGAGATGAAGGCCTTCC
TGGGCTACGTCATCTCCACCAGCACCTCGCACTGCGAGTCGGTCCTGAGCATCTGGAGCG
GCGGCTTCTATAGCAACCGCAGCCTGGCGCTGGTCATGAGCCAGGCCCGCTTCGAGAAGA
TCCTCAAGTACTTCCACGTCGTGGCCTTCCGCTCCAGCCAGACCACGCACGGCCTCTACA
AGGTCCAGCCCTTCCTGGACTCCCTGCAGACCAGCTTCGACTCTGCCTTCAGGCCTTCCC
AAACCCAGGTGCTACACGAACCCCTGATTGACGAGGACCCTGTGTTCATTGCCACGTGCA
CAGAGCGTGAACTTCGGAAGAGGAAAAAGCGGAAATTCAGCCTCTGGGTCAGGCAGTGCT
CGTCCACCGGCTTCATCATCCAGATTTACGTCCACCTGAAGGAAGGCAGCGGCCCTGACG
GGCTCGATGCGCTGAAGAATAAGCCGCAGCTGCATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               163-371, - strand, RNAz p=0.943116

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               163-371, - strand, RNAz p=0.943116

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-371, gnl|bosTau2|chr28 (1109948-1109580)
               

               
               3-371, gnl|Hg17|chr1 (226799740-226799372)
               

               
               3-371, gnl|Mm7|chr8 (122971731-122971363)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-371, gnl|bosTau2|chr28 (1109948-1109580)
               

               
               3-371, gnl|Hg17|chr1 (226799740-226799372)
               

               
               3-371, gnl|Mm7|chr8 (122971731-122971363)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.895828)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.895828)

	3-371, gnl\|bosTau2\|chr28 (1109948-1109580)
	3-371, gnl\|Hg17\|chr1 (226799740-226799372)
	3-371, gnl\|Mm7\|chr8 (122971731-122971363)