Ss1.1-rcbr0_015794.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTCGTCGTCTCCTGTACCCTCTCCGCCCTGGAGTCTAGCAAGTTCCAGGCTGACACTG GCCTCTGTGTGAGCGGGACGAGCTCGGGCTGAGCCGGCGTCCAGCCCTGCGAGTCTGACG GCGTCTCCCGCTTGCAGACCTCAGGAGGAGCCCACCACCTGGACGGGCTACTTCGGGAAG GTGCTCATGGCTTCCACCAGCTACCTGCCCTCCCAGGTGACAGAAATGTTCAACCAGGGC AGAGCCTTTGCCACCGTCCGCCTGCCTTTCTGTGGCCACAAGAACATCTGCGCGCTGGCC ACAATCCAGAAGATTCCGCGACTGCTGGTGGGAGCCTCTGACGGGTACTTGTACATGTAC AACCTGGACCCCCAGGAGGGCGGCGAGTGCACCCTGATGAAACAGCACAAGCTGGACGGC AGCATGGAGACCACCAACGAGATCCTGGACTCCACGTCTCACGACTGCCCCCTGGTGGCG CAGGCCTACGGCACGGCTGCGGCCAAGGGTGCGCCGGTGCCTTCATCCCCGACCGCACTT GCCTACACGGACGAGCTGGGCGCAGCGGGCGGCGCGGGTCTGGAGGACGAGGCCAGCGCC CTGCGGCTGGAGGAGGACAGCGAGCAGCCTCCCATGATTCTGCGGACGGACTGACCTTGA CCTGTGAACCCTTCAGAGCCCTGAGGCAGAGGACACTGACTGACAGAGGACTTCATGTGA TGCTGCTATGAACTTTGACCCGAGATGGGGCGAGGACGGCAGAGACTTCAAGAGGAAAAC AAAGCTTGTAGCTGTGGTCTCATCCCACGCTGTTGAGAAATACATCGTTTTCACTTCAGT GGCTTTTAATCTGGCTTTTAAGTTTTAGCTTTTTGTTTCTTTTCTCTTTTTGCCAAAATT AACTGTTTGGTGGAGCCCTCGAAACCTCCTTGCTTTGCATGTATTCCTGTGCCAAGCCCG CCTGGGGGAGCTAGCGCCGCTTGGTAAGAAGCGCAGGTGGTGGGGTGTGACTCTGCTCAG CGTGTGGCGCGCCCGAGGTGGCGGGCAGCGCGGGTCTGGTTCTGCTCAGGCGGGGCCGGC GTGGGGGGGCTCGCTCCCCAGAGCCCCTCCGGGACCACTTTCCCCGTTTTATTTTGTTAA TTAAATTTTTTCCAAATTGGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTCGTCGTCTCCTGTACCCTCTCCGCCCTGGAGTCTAGCAAGTTCCAGGCTGACACTG GCCTCTGTGTGAGCGGGACGAGCTCGGGCTGAGCCGGCGTCCAGCCCTGCGAGTCTGACG GCGTCTCCCGCTTGCAGACCTCAGGAGGAGCCCACCACCTGGACGGGCTACTTCGGGAAG GTGCTCATGGCTTCCACCAGCTACCTGCCCTCCCAGGTGACAGAAATGTTCAACCAGGGC AGAGCCTTTGCCACCGTCCGCCTGCCTTTCTGTGGCCACAAGAACATCTGCGCGCTGGCC ACAATCCAGAAGATTCCGCGACTGCTGGTGGGAGCCTCTGACGGGTACTTGTACATGTAC AACCTGGACCCCCAGGAGGGCGGCGAGTGCACCCTGATGAAACAGCACAAGCTGGACGGC AGCATGGAGACCACCAACGAGATCCTGGACTCCACGTCTCACGACTGCCCCCTGGTGGCG CAGGCCTACGGCACGGCTGCGGCCAAGGGTGCGCCGGTGCCTTCATCCCCGACCGCACTT GCCTACACGGACGAGCTGGGCGCAGCGGGCGGCGCGGGTCTGGAGGACGAGGCCAGCGCC CTGCGGCTGGAGGAGGACAGCGAGCAGCCTCCCATGATTCTGCGGACGGACTGACCTTGA CCTGTGAACCCTTCAGAGCCCTGAGGCAGAGGACACTGACTGACAGAGGACTTCATGTGA TGCTGCTATGAACTTTGACCCGAGATGGGGCGAGGACGGCAGAGACTTCAAGAGGAAAAC AAAGCTTGTAGCTGTGGTCTCATCCCACGCTGTTGAGAAATACATCGTTTTCACTTCAGT GGCTTTTAATCTGGCTTTTAAGTTTTAGCTTTTTGTTTCTTTTCTCTTTTTGCCAAAATT AACTGTTTGGTGGAGCCCTCGAAACCTCCTTGCTTTGCATGTATTCCTGTGCCAAGCCCG CCTGGGGGAGCTAGCGCCGCTTGGTAAGAAGCGCAGGTGGTGGGGTGTGACTCTGCTCAG CGTGTGGCGCGCCCGAGGTGGCGGGCAGCGCGGGTCTGGTTCTGCTCAGGCGGGGCCGGC GTGGGGGGGCTCGCTCCCCAGAGCCCCTCCGGGACCACTTTCCCCGTTTTATTTTGTTAA TTAAATTTTTTCCAAATTGGAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 145-302, gnl|bosTau2|chr19 (56320948-56321105) | |
| 145-302, gnl|canFam2|chr9 (18249510-18249709) | |
| 145-302, gnl|danRer3|chrUn (99948084-99948288) | |
| 145-302, gnl|dasNov1|scaffold_52589 (7595-7396) | |
| 145-302, gnl|echTel1|scaffold_170578 (1094-897) | |
| 145-302, gnl|fr1|chrUn (91449750-91449550) | |
| 145-302, gnl|galGal2|chr18 (7625873-7626060) | |
| 145-302, gnl|hg17|chr17 (63937728-63937926) | |
| 145-302, gnl|Hg17|chr17 (63937889-63937732) | |
| 145-302, gnl|loxAfr1|scaffold_50710 (11879-12078) | |
| 145-302, gnl|mm7|chr11 (109688664-109688864) | |
| 145-302, gnl|Mm7|chr11 (109688825-109688668) | |
| 145-302, gnl|monDom2|scaffold_18 (21392765-21392965) | |
| 145-302, gnl|oryCun1|scaffold_198829 (143099-142900) | |
| 145-302, gnl|panTro1|chr19 (67237833-67238031) | |
| 145-302, gnl|rheMac2|chr16 (63698450-63698648) | |
| 145-302, gnl|rn3|chr10 (98762391-98762191) | |
| 145-302, gnl|tetNig1|chr2 (4151078-4151256) | |
| 145-302, gnl|xenTro1|scaffold_4229 (6783-6598) | |
| 408-539, gnl|bosTau2|chr25 (37306319-37306188) | |
| 408-539, gnl|canFam2|chr6 (15671674-15671563) | |
| 408-539, gnl|danRer3|chr3 (37079013-37079120) | |
| 408-539, gnl|dasNov1|scaffold_151689 (3416-3321) | |
| 408-539, gnl|echTel1|scaffold_142792 (153-50) | |
| 408-539, gnl|fr1|chrUn (72415644-72415750) | |
| 408-539, gnl|galGal2|chr14 (6222175-6222288) | |
| 408-539, gnl|hg17|chr7 (5042470-5042581) | |
| 408-539, gnl|Hg17|chr7 (5042477-5042608) | |
| 408-539, gnl|loxAfr1|scaffold_146420 (314-425) | |
| 408-539, gnl|mm7|chr5 (141643777-141643888) | |
| 408-539, gnl|Mm7|chr5 (141643784-141643915) | |
| 408-539, gnl|monDom2|scaffold_17 (4886772-4886886) | |
| 408-539, gnl|oryCun1|scaffold_139933 (13717-13833) | |
| 408-539, gnl|panTro1|chr6 (5463544-5463655) | |
| 408-539, gnl|rheMac2|chr3 (43786129-43786018) | |
| 408-539, gnl|rn3|chr12 (12337575-12337464) | |
| 408-539, gnl|tetNig1|chrUn_random (38936883-38936777) | |
| 544-1161, gnl|bosTau2|chr25 (37305438-37304786) | |
| 544-1161, gnl|Hg17|chr7 (5043709-5044397) | |
| 544-1161, gnl|Mm7|chr5 (141644555-141645229) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 145-302, gnl|bosTau2|chr19 (56320948-56321105) | |
| 145-302, gnl|canFam2|chr9 (18249510-18249709) | |
| 145-302, gnl|danRer3|chrUn (99948084-99948288) | |
| 145-302, gnl|dasNov1|scaffold_52589 (7595-7396) | |
| 145-302, gnl|echTel1|scaffold_170578 (1094-897) | |
| 145-302, gnl|fr1|chrUn (91449750-91449550) | |
| 145-302, gnl|galGal2|chr18 (7625873-7626060) | |
| 145-302, gnl|hg17|chr17 (63937728-63937926) | |
| 145-302, gnl|Hg17|chr17 (63937889-63937732) | |
| 145-302, gnl|loxAfr1|scaffold_50710 (11879-12078) | |
| 145-302, gnl|mm7|chr11 (109688664-109688864) | |
| 145-302, gnl|Mm7|chr11 (109688825-109688668) | |
| 145-302, gnl|monDom2|scaffold_18 (21392765-21392965) | |
| 145-302, gnl|oryCun1|scaffold_198829 (143099-142900) | |
| 145-302, gnl|panTro1|chr19 (67237833-67238031) | |
| 145-302, gnl|rheMac2|chr16 (63698450-63698648) | |
| 145-302, gnl|rn3|chr10 (98762391-98762191) | |
| 145-302, gnl|tetNig1|chr2 (4151078-4151256) | |
| 145-302, gnl|xenTro1|scaffold_4229 (6783-6598) | |
| 408-539, gnl|bosTau2|chr25 (37306319-37306188) | |
| 408-539, gnl|canFam2|chr6 (15671674-15671563) | |
| 408-539, gnl|danRer3|chr3 (37079013-37079120) | |
| 408-539, gnl|dasNov1|scaffold_151689 (3416-3321) | |
| 408-539, gnl|echTel1|scaffold_142792 (153-50) | |
| 408-539, gnl|fr1|chrUn (72415644-72415750) | |
| 408-539, gnl|galGal2|chr14 (6222175-6222288) | |
| 408-539, gnl|hg17|chr7 (5042470-5042581) | |
| 408-539, gnl|Hg17|chr7 (5042477-5042608) | |
| 408-539, gnl|loxAfr1|scaffold_146420 (314-425) | |
| 408-539, gnl|mm7|chr5 (141643777-141643888) | |
| 408-539, gnl|Mm7|chr5 (141643784-141643915) | |
| 408-539, gnl|monDom2|scaffold_17 (4886772-4886886) | |
| 408-539, gnl|oryCun1|scaffold_139933 (13717-13833) | |
| 408-539, gnl|panTro1|chr6 (5463544-5463655) | |
| 408-539, gnl|rheMac2|chr3 (43786129-43786018) | |
| 408-539, gnl|rn3|chr12 (12337575-12337464) | |
| 408-539, gnl|tetNig1|chrUn_random (38936883-38936777) | |
| 544-1161, gnl|bosTau2|chr25 (37305438-37304786) | |
| 544-1161, gnl|Hg17|chr7 (5043709-5044397) | |
| 544-1161, gnl|Mm7|chr5 (141644555-141645229) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| cbr (0.895828) | |
| ece (0.229305) | |
| col (0.195008) | |
| ill (0.175593) | |
| sin (0.174948) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (0.895828) | |
| ece (0.229305) | |
| col (0.195008) | |
| ill (0.175593) | |
| sin (0.174948) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ese (0.126502) | |
| cbl (0.114797) | |
| nbm (0.0993246) |