Non-Coding RNA Search

Ss1.1-rcbr0_015828.5

Sequence:


               
               CGCCCACCAGAGAACCATGCGGGACCAGGACAGCGGGAAGGAGAACGAGATGGACTGGGA
CGACTCCGCCTTGACCATCACCGTGAACCCCATGGAGACGTACGAGGACCAGCACAGCAG
CGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGAGCGAGGACGGGGACGAGGAGGATGACAT
CACCAGCGCCGAGTCGGAGAGCAGCGAGGAGGAGGAGGGGGAGCACGGCGACCAGCAGAC
AGCCAGCAGGCAGCAGCAGCTGGAGTGGGACGACTCCACCCTCAGCTACTGAGCCGGCCG
CCCCTCCGTCCCCCCACTTTCCTGCTTCAAGAGACTCCACTGTCATCTCTGCGCTCGCCC
CGAGGGTCCACGGTGTACAAAGTCATTCTGGCCAGTCGGTCTGCCGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCACCAGAGAACCATGCGGGACCAGGACAGCGGGAAGGAGAACGAGATGGACTGGGA
CGACTCCGCCTTGACCATCACCGTGAACCCCATGGAGACGTACGAGGACCAGCACAGCAG
CGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGAGCGAGGACGGGGACGAGGAGGATGACAT
CACCAGCGCCGAGTCGGAGAGCAGCGAGGAGGAGGAGGGGGAGCACGGCGACCAGCAGAC
AGCCAGCAGGCAGCAGCAGCTGGAGTGGGACGACTCCACCCTCAGCTACTGAGCCGGCCG
CCCCTCCGTCCCCCCACTTTCCTGCTTCAAGAGACTCCACTGTCATCTCTGCGCTCGCCC
CGAGGGTCCACGGTGTACAAAGTCATTCTGGCCAGTCGGTCTGCCGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               212-318, - strand, RNAz p=0.984029

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               212-318, - strand, RNAz p=0.984029

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               276-332, - strand, RNAmicro p=0.964209

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               276-332, - strand, RNAmicro p=0.964209

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               96-408, gnl|bosTau2|chr16 (30891178-30890854)
               

               
               96-408, gnl|Hg17|chr1 (9725031-9724719)
               

               
               96-408, gnl|Mm7|chr4 (148636913-148637195)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-408, gnl|bosTau2|chr16 (30891178-30890854)
               

               
               96-408, gnl|Hg17|chr1 (9725031-9724719)
               

               
               96-408, gnl|Mm7|chr4 (148636913-148637195)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cbr (1.66368)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (1.66368)
               

               
               pty (0.142714)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	96-408, gnl\|bosTau2\|chr16 (30891178-30890854)
	96-408, gnl\|Hg17\|chr1 (9725031-9724719)
	96-408, gnl\|Mm7\|chr4 (148636913-148637195)

	cbr (1.66368)
	pty (0.142714)
	cov (0.132153)
	cly (0.120642)
	eru (0.120048)
	jca (0.11396)