Ss1.1-rcbr0_016143.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGGCCGTGGAGGCGGAAGTGGCGCGGCCGCGGAGGGGCCTGGAGCACGGCGGCGGGAC CCGGAGCGGGAGCGGCGGCGGCAGCGGCGGCTGGAGGTGGCGGCGGCGCACTGGAGGCGG CCATGGCAAAGCAGTACGACTCGGTGGAGTGCCCCTGCATCTGAGGCAGCTCATTTCAGA AGAAGCTCGCTAACTCTGTCTCCCAACCTTCGACCCTTACTGTGGATCCCATGGCCAGTT CCTGGGTCAGTAGTGTGCTCTCCCGCTCTTGACCTCCTTGTCTTTCTCTCACCCAGTTCC CCATCACGGCCTTGCGGGAAATCAAGATCCTCCAGCTCCTAAAACACGAGAACGTGGTCA ACCTGATTGAGATCTGTCGAACCAAAGCTTCCCCCTATAACCGCTGCAAAGGCAGCATAT ACCTGGTGTTTGACTTCTGTGAGCATGACCTCGCCGGGCTGCTGAGCAACGTCTTAGTCA AGTTCACGCTGTCGGAGATCAAGCGGGTCATGCAGATGTTGCTCAATGGCCTCTACTACA TCCACAGGAACAAGATCCTGCACCGGGACATGAAGGCGGCCAACGTGCTCATCACCCGCG ACGGGGTGCTGAAGCTGGCCGACTTCGGGCTGGCCCGGGCCTTCAGCCTTGCCAAGAACA GCCAGCCCAACCGCTACACCAACCGTGTGGTGACGCTCTGGTACCGGCCCCCGGAGCTGT TGCTCGGGGAGCGGGACTACGGCCCCCCCATCGACCTGTGGGGTGCCGGGTGCATCATGG CGGAGATGTGGACACGCAGCCCCATCATGCAGGGCAACACGGAGCAGCACCAGCTTGCCC TCATCAGCCAGCTCTGTGGCTCCATCACCCCTGAGGTGTGGCCAAACGTGGACAAGTATG AGCTGTTTGAGAAACTGGAGCTGGTCAAGGGCCAGAAGCGGAAGGTGAAGGACAGGCTGA AGGCCTACGTGCGTGACCCCTACGCGCTGGACCTCATCGACAAGCTGCTGGTGTTGGATC CCGCCCAGCGCATCGACAGTGACGACGCCCTCAACCACGACTTCTTCTGGTCCGACCCCA TGCCCTCGGACCTCAAGGGCATGCTGTCCACCCACCTGACGTCCATGTTCGAGTACCTGG CCCCGCCGCGCCGGAAGGGCAGCCAGATCACCCAGCAGTCCACCAACCAGAGCCGCAATC CAGCCACCACCAACCAGACGGAGTTCGAGCGCGTCTTCTGAGGGCCGGCTGCTGGTGCTT CTCGCTAGGGCTGTTTGATTTTTTCCTTCTGCTCTGTGATTTGCGTTGTGGAGATGATGG GGCATTTGAGTTTTTTCTCTAGTGCATATTTTATTTAATCCCCGCCGGGGGCGTCGGGAG CCCGCCGCGCGGACTGGAATAAAGCTGTGGCTGAGAGTCCAGGAGGGCACCTGGGCTGCC TCACCTTGTTCCCAGGCTTTGGGGACGATGCCCAGAGGGTCTCCATTGACTTTAGGACAG GAGTGCGGTGGGAGGAGCGGTGCCCCGCACCAGTGACTTTCTAAGAGATCCCAGCATGCT GGGAGGAGGGGACAGGCCCCTCACCCGTCCCCAACCCTCCCTGTGGGATGAGAAACTTGC TTAGGGGACCGAACCAGCCTCGAGAATGGGCTGTTCTTGGCCTCACCCTCAGAAGCTCTG GGGCTGGCAGGAACTCTTGGTTTTTTTCACTAGGAGAGTTTTATCGTGTTTCTTTTGTTT GATTGTTCGGAGACATTCCTGGCTGCAGTTTGGTCAGTTACAATTAAAGTTGACTTTTTC AGTAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGGCCGTGGAGGCGGAAGTGGCGCGGCCGCGGAGGGGCCTGGAGCACGGCGGCGGGAC CCGGAGCGGGAGCGGCGGCGGCAGCGGCGGCTGGAGGTGGCGGCGGCGCACTGGAGGCGG CCATGGCAAAGCAGTACGACTCGGTGGAGTGCCCCTGCATCTGAGGCAGCTCATTTCAGA AGAAGCTCGCTAACTCTGTCTCCCAACCTTCGACCCTTACTGTGGATCCCATGGCCAGTT CCTGGGTCAGTAGTGTGCTCTCCCGCTCTTGACCTCCTTGTCTTTCTCTCACCCAGTTCC CCATCACGGCCTTGCGGGAAATCAAGATCCTCCAGCTCCTAAAACACGAGAACGTGGTCA ACCTGATTGAGATCTGTCGAACCAAAGCTTCCCCCTATAACCGCTGCAAAGGCAGCATAT ACCTGGTGTTTGACTTCTGTGAGCATGACCTCGCCGGGCTGCTGAGCAACGTCTTAGTCA AGTTCACGCTGTCGGAGATCAAGCGGGTCATGCAGATGTTGCTCAATGGCCTCTACTACA TCCACAGGAACAAGATCCTGCACCGGGACATGAAGGCGGCCAACGTGCTCATCACCCGCG ACGGGGTGCTGAAGCTGGCCGACTTCGGGCTGGCCCGGGCCTTCAGCCTTGCCAAGAACA GCCAGCCCAACCGCTACACCAACCGTGTGGTGACGCTCTGGTACCGGCCCCCGGAGCTGT TGCTCGGGGAGCGGGACTACGGCCCCCCCATCGACCTGTGGGGTGCCGGGTGCATCATGG CGGAGATGTGGACACGCAGCCCCATCATGCAGGGCAACACGGAGCAGCACCAGCTTGCCC TCATCAGCCAGCTCTGTGGCTCCATCACCCCTGAGGTGTGGCCAAACGTGGACAAGTATG AGCTGTTTGAGAAACTGGAGCTGGTCAAGGGCCAGAAGCGGAAGGTGAAGGACAGGCTGA AGGCCTACGTGCGTGACCCCTACGCGCTGGACCTCATCGACAAGCTGCTGGTGTTGGATC CCGCCCAGCGCATCGACAGTGACGACGCCCTCAACCACGACTTCTTCTGGTCCGACCCCA TGCCCTCGGACCTCAAGGGCATGCTGTCCACCCACCTGACGTCCATGTTCGAGTACCTGG CCCCGCCGCGCCGGAAGGGCAGCCAGATCACCCAGCAGTCCACCAACCAGAGCCGCAATC CAGCCACCACCAACCAGACGGAGTTCGAGCGCGTCTTCTGAGGGCCGGCTGCTGGTGCTT CTCGCTAGGGCTGTTTGATTTTTTCCTTCTGCTCTGTGATTTGCGTTGTGGAGATGATGG GGCATTTGAGTTTTTTCTCTAGTGCATATTTTATTTAATCCCCGCCGGGGGCGTCGGGAG CCCGCCGCGCGGACTGGAATAAAGCTGTGGCTGAGAGTCCAGGAGGGCACCTGGGCTGCC TCACCTTGTTCCCAGGCTTTGGGGACGATGCCCAGAGGGTCTCCATTGACTTTAGGACAG GAGTGCGGTGGGAGGAGCGGTGCCCCGCACCAGTGACTTTCTAAGAGATCCCAGCATGCT GGGAGGAGGGGACAGGCCCCTCACCCGTCCCCAACCCTCCCTGTGGGATGAGAAACTTGC TTAGGGGACCGAACCAGCCTCGAGAATGGGCTGTTCTTGGCCTCACCCTCAGAAGCTCTG GGGCTGGCAGGAACTCTTGGTTTTTTTCACTAGGAGAGTTTTATCGTGTTTCTTTTGTTT GATTGTTCGGAGACATTCCTGGCTGCAGTTTGGTCAGTTACAATTAAAGTTGACTTTTTC AGTAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 553-846, + strand, RNAz p=0.976803 | |
| 1012-1131, - strand, RNAz p=0.555744 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 553-846, + strand, RNAz p=0.976803 | |
| 1012-1131, - strand, RNAz p=0.555744 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 159-387, gnl|bosTau2|chr11 (77314116-77314347) | |
| 159-387, gnl|Hg17|chr9 (127629224-127629441) | |
| 159-387, gnl|Mm7|chr2 (32717992-32717788) | |
| 528-846, gnl|bosTau2|chr19 (26941517-26941835) | |
| 528-846, gnl|canFam2|chr5 (43835082-43834602) | |
| 528-846, gnl|danRer3|chr12 (665581-665117) | |
| 528-846, gnl|dasNov1|scaffold_122170 (3577-4072) | |
| 528-846, gnl|echTel1|scaffold_284977 (6089-6568) | |
| 528-846, gnl|fr1|chrUn (113245533-113246009) | |
| 528-846, gnl|hg17|chr17 (19224475-19224958) | |
| 528-846, gnl|Hg17|chr17 (19224620-19224938) | |
| 528-846, gnl|loxAfr1|scaffold_42400 (10729-10249) | |
| 528-846, gnl|mm7|chr11 (61573279-61572802) | |
| 528-846, gnl|Mm7|chr11 (61573138-61572820) | |
| 528-846, gnl|monDom2|scaffold_19 (7467268-7467761) | |
| 528-846, gnl|oryCun1|scaffold_136184 (10283-9808) | |
| 528-846, gnl|panTro1|chr19 (19550177-19550660) | |
| 528-846, gnl|rheMac2|chr16 (18931466-18931949) | |
| 528-846, gnl|rn3|chr10 (47665740-47665263) | |
| 528-846, gnl|tetNig1|chr15 (7019167-7019644) | |
| 528-846, gnl|xenTro1|scaffold_284 (10676-10204) | |
| 553-731, gnl|bosTau2|chr11 (77314976-77315154) | |
| 553-731, gnl|Hg17|chr9 (127630045-127630223) | |
| 553-731, gnl|Mm7|chr2 (32717257-32717079) | |
| 857-1806, gnl|bosTau2|chr11 (77316191-77317146) | |
| 857-1806, gnl|Hg17|chr9 (127630994-127631920) | |
| 857-1806, gnl|Mm7|chr2 (32715624-32714749) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 159-387, gnl|bosTau2|chr11 (77314116-77314347) | |
| 159-387, gnl|Hg17|chr9 (127629224-127629441) | |
| 159-387, gnl|Mm7|chr2 (32717992-32717788) | |
| 528-846, gnl|bosTau2|chr19 (26941517-26941835) | |
| 528-846, gnl|canFam2|chr5 (43835082-43834602) | |
| 528-846, gnl|danRer3|chr12 (665581-665117) | |
| 528-846, gnl|dasNov1|scaffold_122170 (3577-4072) | |
| 528-846, gnl|echTel1|scaffold_284977 (6089-6568) | |
| 528-846, gnl|fr1|chrUn (113245533-113246009) | |
| 528-846, gnl|hg17|chr17 (19224475-19224958) | |
| 528-846, gnl|Hg17|chr17 (19224620-19224938) | |
| 528-846, gnl|loxAfr1|scaffold_42400 (10729-10249) | |
| 528-846, gnl|mm7|chr11 (61573279-61572802) | |
| 528-846, gnl|Mm7|chr11 (61573138-61572820) | |
| 528-846, gnl|monDom2|scaffold_19 (7467268-7467761) | |
| 528-846, gnl|oryCun1|scaffold_136184 (10283-9808) | |
| 528-846, gnl|panTro1|chr19 (19550177-19550660) | |
| 528-846, gnl|rheMac2|chr16 (18931466-18931949) | |
| 528-846, gnl|rn3|chr10 (47665740-47665263) | |
| 528-846, gnl|tetNig1|chr15 (7019167-7019644) | |
| 528-846, gnl|xenTro1|scaffold_284 (10676-10204) | |
| 553-731, gnl|bosTau2|chr11 (77314976-77315154) | |
| 553-731, gnl|Hg17|chr9 (127630045-127630223) | |
| 553-731, gnl|Mm7|chr2 (32717257-32717079) | |
| 857-1806, gnl|bosTau2|chr11 (77316191-77317146) | |
| 857-1806, gnl|Hg17|chr9 (127630994-127631920) | |
| 857-1806, gnl|Mm7|chr2 (32715624-32714749) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| cbr (3.32736) | |
| csp (0.644745) | |
| pla (0.401016) | |
| eep (0.367692) | |
| ill (0.351185) | |
| cag (0.302389) | |
| cst (0.280073) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (3.32736) | |
| csp (0.644745) | |
| pla (0.401016) | |
| eep (0.367692) | |
| ill (0.351185) | |
| cag (0.302389) | |
| cst (0.280073) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pgl (0.236967) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| hyp (0.142837) | |
| csk (0.140746) | |
| nca (0.136874) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| eje (0.0988338) |