Non-Coding RNA Search

Ss1.1-rcga10b_b9.5

Sequence:


               
               TGTGAAGGTGCCCATGCCCACTTGCTCCTCTCATTCCCCTATGGACAGCTCAGCTTTGGA
TTCAAGCAGGAGCCACTGAAGAGCACTGTCTACCTGAACTATATGGCTATTGAGCACAAC
GTGTCCTTCCCCGGGGCAGTGCAGTGGACATTCTCAGTTCAGAATTCATCCCTTCGAGAG
CTCCAAACCCCTCTGGGCCAGAGCTACAGTTGCAGAAATGCAAGCATCATTCTTTCACCA
GCTTTCCACCTTGACCTGCTCTCCCTGAAGCTACAAGCTGGTCAGCTGCCCCCCACAGGG
GCCTTTGGACCAAATTTCTTTTGTCCCAGTGACAAATCCAACATGCGGCCTCTCATCATC
AGCCTGATTTTAATTGGCATCATAATCTCGATGTTCGTTACCTTCCCCTTCATACGGAGA
CGCCGACGCATCTACCAGCTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGAAGGTGCCCATGCCCACTTGCTCCTCTCATTCCCCTATGGACAGCTCAGCTTTGGA
TTCAAGCAGGAGCCACTGAAGAGCACTGTCTACCTGAACTATATGGCTATTGAGCACAAC
GTGTCCTTCCCCGGGGCAGTGCAGTGGACATTCTCAGTTCAGAATTCATCCCTTCGAGAG
CTCCAAACCCCTCTGGGCCAGAGCTACAGTTGCAGAAATGCAAGCATCATTCTTTCACCA
GCTTTCCACCTTGACCTGCTCTCCCTGAAGCTACAAGCTGGTCAGCTGCCCCCCACAGGG
GCCTTTGGACCAAATTTCTTTTGTCCCAGTGACAAATCCAACATGCGGCCTCTCATCATC
AGCCTGATTTTAATTGGCATCATAATCTCGATGTTCGTTACCTTCCCCTTCATACGGAGA
CGCCGACGCATCTACCAGCTCCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               182-313, - strand, RNAz p=0.988745

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-313, - strand, RNAz p=0.988745

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               182-313, BW958764 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW958764.1|), blast E-value=0, identity=98.48% 
               

               
               182-313, BW959990 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW959990.1|), blast E-value=0, identity=98.48% 
               

               
               182-313, BW961464 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW961464.1|), blast E-value=0, identity=98.48% 
               

               
               182-313, BW962269 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW962269.1|), blast E-value=0, identity=96.97% 
               

               
               182-313, DB806420 full-length enriched swine cDNA library, adult alveolar 
(dbj|DB806420.1|), blast E-value=0, identity=93.94% 
               

               
               182-313, 4081456 BARC 9BOV Bos taurus cDNA clone 9BOV1_K17 3', mRNA sequence 
(gb|CK966330.1|), blast E-value=1.4013e-45, identity=93.18%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               182-313, BW958764 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW958764.1|), blast E-value=0, identity=98.48% 
               

               
               182-313, BW959990 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW959990.1|), blast E-value=0, identity=98.48% 
               

               
               182-313, BW961464 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW961464.1|), blast E-value=0, identity=98.48% 
               

               
               182-313, BW962269 full-length enriched swine cDNA library, adult alveolar 
(dbj|BW962269.1|), blast E-value=0, identity=96.97% 
               

               
               182-313, DB806420 full-length enriched swine cDNA library, adult alveolar 
(dbj|DB806420.1|), blast E-value=0, identity=93.94% 
               

               
               182-313, 4081456 BARC 9BOV Bos taurus cDNA clone 9BOV1_K17 3', mRNA sequence 
(gb|CK966330.1|), blast E-value=1.4013e-45, identity=93.18%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               143-313, gnl|bosTau2|chr19 (13282058-13282228)
               

               
               143-313, gnl|Hg17|chr17 (7424938-7425108)
               

               
               143-313, gnl|Mm7|chr11 (69746495-69746325)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-313, gnl|bosTau2|chr19 (13282058-13282228)
               

               
               143-313, gnl|Hg17|chr17 (7424938-7425108)
               

               
               143-313, gnl|Mm7|chr11 (69746495-69746325)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cga (0.558191)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)

	182-313, BW958764 full-length enriched swine cDNA library, adult alveolar (dbj\|BW958764.1\|), blast E-value=0, identity=98.48%
	182-313, BW959990 full-length enriched swine cDNA library, adult alveolar (dbj\|BW959990.1\|), blast E-value=0, identity=98.48%
	182-313, BW961464 full-length enriched swine cDNA library, adult alveolar (dbj\|BW961464.1\|), blast E-value=0, identity=98.48%
	182-313, BW962269 full-length enriched swine cDNA library, adult alveolar (dbj\|BW962269.1\|), blast E-value=0, identity=96.97%
	182-313, DB806420 full-length enriched swine cDNA library, adult alveolar (dbj\|DB806420.1\|), blast E-value=0, identity=93.94%
	182-313, 4081456 BARC 9BOV Bos taurus cDNA clone 9BOV1_K17 3', mRNA sequence (gb\|CK966330.1\|), blast E-value=1.4013e-45, identity=93.18%

	143-313, gnl\|bosTau2\|chr19 (13282058-13282228)
	143-313, gnl\|Hg17\|chr17 (7424938-7425108)
	143-313, gnl\|Mm7\|chr11 (69746495-69746325)