Non-Coding RNA Search

Ss1.1-rcga20b_n5.5

Sequence:


               
               GCCTGGACGGTGCTTCTGATCGGGCTCCTCGCTGTCGGCTCAGGGGTGGATTCTCAGACT
GTGATCCAGGAGCCGGCGATGTCAGTGTCTCCTGGAGGGACCGTCACACTCACCTGTGCC
TTTAGCTCTGGGTCAGTCACTAGTAGTAACTACCCTGGCTGGTTCCAGCAGACACCAGGC
CAGCCTCCCCGACAGCTGATCTACAACACAAACAGCCGCCCGACTGGGGTCCCCAGTCGC
TTCTCTGGAGCCATCTCTGGGAACAAAGCCACCCTCACCATCACGGGGGCCCAGGCTGAG
GACGAGGCCGACTATTTCTGTGCTCTGTATAAAAGT------------CCCTTCGGCGGT
GGGACCCATCTGACCGTCCTCGGTCAGCCCAAGGCCGCTCCCACGGTCAACCTCTTCCCG
CCCTCCTCTGAGGAGCTCGGCACCAACAAGGCCACCCTGGTGTGTCTAATAAGTGACTTC
TACCCGGGCGCCGTGACGGTGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGGACGGTGCTTCTGATCGGGCTCCTCGCTGTCGGCTCAGGGGTGGATTCTCAGACT
GTGATCCAGGAGCCGGCGATGTCAGTGTCTCCTGGAGGGACCGTCACACTCACCTGTGCC
TTTAGCTCTGGGTCAGTCACTAGTAGTAACTACCCTGGCTGGTTCCAGCAGACACCAGGC
CAGCCTCCCCGACAGCTGATCTACAACACAAACAGCCGCCCGACTGGGGTCCCCAGTCGC
TTCTCTGGAGCCATCTCTGGGAACAAAGCCACCCTCACCATCACGGGGGCCCAGGCTGAG
GACGAGGCCGACTATTTCTGTGCTCTGTATAAAAGT------------CCCTTCGGCGGT
GGGACCCATCTGACCGTCCTCGGTCAGCCCAAGGCCGCTCCCACGGTCAACCTCTTCCCG
CCCTCCTCTGAGGAGCTCGGCACCAACAAGGCCACCCTGGTGTGTCTAATAAGTGACTTC
TACCCGGGCGCCGTGACGGTGACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|106636|pir||S25749

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|106636|pir||S25749

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               370-489, gnl|bosTau2|chr17 (41403615-41403734)
               

               
               370-489, gnl|Hg17|chr22 (21586260-21586379)
               

               
               370-489, gnl|Mm7|chr16_random (2587805-2587924)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               370-489, gnl|bosTau2|chr17 (41403615-41403734)
               

               
               370-489, gnl|Hg17|chr22 (21586260-21586379)
               

               
               370-489, gnl|Mm7|chr16_random (2587805-2587924)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cga (0.279096)
               

               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               cly (0.241284)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

	370-489, gnl\|bosTau2\|chr17 (41403615-41403734)
	370-489, gnl\|Hg17\|chr22 (21586260-21586379)
	370-489, gnl\|Mm7\|chr16_random (2587805-2587924)

	cga (0.279096)
	cly (0.241284)
	col (0.195008)
	ill (0.175593)
	csp (0.161186)
	lnt (0.142308)
	med (0.116252)