Non-Coding RNA Search

Ss1.1-rcga21b_j11.5

Sequence:


               
               CCTAGATGGCCGTGCGCAGCGCTGAGTTGGGAGTGTTTTCTCTCTCTGACCCGGGCTGCA
GAAAGCTGCATTTAAAGTTCTGCACCTGGTCACTGCTTCAGAAACCCACTTTTCTCTGAG
AGTCAAGAATCGCCGCTTCCTTTTAGTTCCTGCAGGTTACTCATCTGCCCCTGACTTGTT
CACTGCTCCACCTCCGGACACTCTCAAGTCCCTGACACCCCCAGACTCAAAACTATGAGT
CTTCGGCAGCTGCTCAAGCGATTGCCCTACTTCGGGGCCTCGGGTCCCCCGCGTCGCCCC
CTCGACACCATTTCCTCGGTGGTCTCCTGGCGTGGTCAGTCCTCCAGGTCTCCAGCCCAC
TGGAACCAAGTGGTGTCAGAGGCTGAGAAGATCGTGGGCTATCCCACGTCCTTCATGAGC
CTCCGCTGCCTGCTGAGCGACGAGCTCAGCAACATCGCTATGCAGGTGCGGAAGCTGGTG
GGAACTCAGCACCCTCTGCTTACCACAGCCAGGGGCCTTGTACATGACAGCCAGCATAAC
CTCCAGTTGAGGGGCTTGGTGGTGCTACTTATTTCTAAGGCAGCTGGGCCCAGCAGCGTG
AATGCTTCTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAGATGGCCGTGCGCAGCGCTGAGTTGGGAGTGTTTTCTCTCTCTGACCCGGGCTGCA
GAAAGCTGCATTTAAAGTTCTGCACCTGGTCACTGCTTCAGAAACCCACTTTTCTCTGAG
AGTCAAGAATCGCCGCTTCCTTTTAGTTCCTGCAGGTTACTCATCTGCCCCTGACTTGTT
CACTGCTCCACCTCCGGACACTCTCAAGTCCCTGACACCCCCAGACTCAAAACTATGAGT
CTTCGGCAGCTGCTCAAGCGATTGCCCTACTTCGGGGCCTCGGGTCCCCCGCGTCGCCCC
CTCGACACCATTTCCTCGGTGGTCTCCTGGCGTGGTCAGTCCTCCAGGTCTCCAGCCCAC
TGGAACCAAGTGGTGTCAGAGGCTGAGAAGATCGTGGGCTATCCCACGTCCTTCATGAGC
CTCCGCTGCCTGCTGAGCGACGAGCTCAGCAACATCGCTATGCAGGTGCGGAAGCTGGTG
GGAACTCAGCACCCTCTGCTTACCACAGCCAGGGGCCTTGTACATGACAGCCAGCATAAC
CTCCAGTTGAGGGGCTTGGTGGTGCTACTTATTTCTAAGGCAGCTGGGCCCAGCAGCGTG
AATGCTTCTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62666312|ref|XP_574799.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62666312|ref|XP_574799.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               202-513, - strand, RNAz p=0.993043

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-513, - strand, RNAz p=0.993043

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-513, gnl|bosTau2|chr9 (23948022-23947516)
               

               
               3-513, gnl|Hg17|chr6 (107887410-107886886)
               

               
               3-513, gnl|Mm7|chr10 (43031878-43032402)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-513, gnl|bosTau2|chr9 (23948022-23947516)
               

               
               3-513, gnl|Hg17|chr6 (107887410-107886886)
               

               
               3-513, gnl|Mm7|chr10 (43031878-43032402)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cga (0.279096)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)

	3-513, gnl\|bosTau2\|chr9 (23948022-23947516)
	3-513, gnl\|Hg17\|chr6 (107887410-107886886)
	3-513, gnl\|Mm7\|chr10 (43031878-43032402)