Non-Coding RNA Search

Ss1.1-rcga30b_g15.5

Sequence:


               
               AGCCTTTGCTGTTGTCTGTGCTGCCGACTGACCTTGGCTGCGGCGCTCTGGGGGGATGGC
GTTTCCAGGTCTCGCAGGTGCCTTCGGGGGATGCTCACGATGACAGCGTAACCCACGGCA
GCCCTTCATCTGCTCTCAACACTGGCCACGGTTTTCGAATCCAGGCTCGTGGTCTTCTTC
CCTGCTTTTTCTTTTTTTTGGATCGGGACTCCATACAATAGTTTTTATTCTGTGTGTTCT
CTGTGCTTCGTTTCTTTGGAAAACCCCTTCGAGCTAAGAGCTGGGATGATGAAAGCACTG
GCAGCTTCCCCTTGGCAGCCCCTTCGCGTTAGCTTTCGGCACTTTGCTTTGGCAGAACTC
ACTTAACTTTATAGGGGTTAGAGTTTACCTGGAAGAGAACAAAGCCATTTCTTTGGCCAT
CCGGAGGGGGTGACCTGCCCCCCAGCAGTTCTGAACTCTGGTCTTGAACTTACTCGCTTG
ATTTGAAGGATAGGGCAGCCGCAGAGCGAGGTCACTCTGCACCTGAATCCCATCTCCTCA
GTCCATATTCACCACAAGCCTGTCGTGTTCCTGCTCAACTCCCCGCAGCCCCTGGTCTGG
CATCTGAAGACAGAGAGACTTGCAGTTGGGGTCTCCAGACTTTTCTTGGTATCCGAGGGC
TCTGTGGTCCATTTTTCATCGGGAAACTTCTCCTTGTCAGCAGAAACAGAGGAAAGGAAC
TTCCCCCATGGAAACGAACACCTGCTAAATTGGGCCCGAAAGGAGTATGGGGCCGTCACG
TCATTCACCGAACTCAAGATAGCAAGAAACATTTACATTAAAGTGGGGGAAGGTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTTTGCTGTTGTCTGTGCTGCCGACTGACCTTGGCTGCGGCGCTCTGGGGGGATGGC
GTTTCCAGGTCTCGCAGGTGCCTTCGGGGGATGCTCACGATGACAGCGTAACCCACGGCA
GCCCTTCATCTGCTCTCAACACTGGCCACGGTTTTCGAATCCAGGCTCGTGGTCTTCTTC
CCTGCTTTTTCTTTTTTTTGGATCGGGACTCCATACAATAGTTTTTATTCTGTGTGTTCT
CTGTGCTTCGTTTCTTTGGAAAACCCCTTCGAGCTAAGAGCTGGGATGATGAAAGCACTG
GCAGCTTCCCCTTGGCAGCCCCTTCGCGTTAGCTTTCGGCACTTTGCTTTGGCAGAACTC
ACTTAACTTTATAGGGGTTAGAGTTTACCTGGAAGAGAACAAAGCCATTTCTTTGGCCAT
CCGGAGGGGGTGACCTGCCCCCCAGCAGTTCTGAACTCTGGTCTTGAACTTACTCGCTTG
ATTTGAAGGATAGGGCAGCCGCAGAGCGAGGTCACTCTGCACCTGAATCCCATCTCCTCA
GTCCATATTCACCACAAGCCTGTCGTGTTCCTGCTCAACTCCCCGCAGCCCCTGGTCTGG
CATCTGAAGACAGAGAGACTTGCAGTTGGGGTCTCCAGACTTTTCTTGGTATCCGAGGGC
TCTGTGGTCCATTTTTCATCGGGAAACTTCTCCTTGTCAGCAGAAACAGAGGAAAGGAAC
TTCCCCCATGGAAACGAACACCTGCTAAATTGGGCCCGAAAGGAGTATGGGGCCGTCACG
TCATTCACCGAACTCAAGATAGCAAGAAACATTTACATTAAAGTGGGGGAAGGTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56205343|emb|CAI22636.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56205343|emb|CAI22636.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               720-837, + strand, RNAz p=0.973846

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               720-837, + strand, RNAz p=0.973846

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               71-516, gnl|bosTau2|chr3 (41924360-41924808)
               

               
               71-516, gnl|Hg17|chr1 (91937097-91936646)
               


               
               643-837, gnl|bosTau2|chr3 (41948521-41948715)
               

               
               643-837, gnl|canFam2|chr6 (60222247-60222043)
               

               
               643-837, gnl|danRer3|chrNA (180348379-180348579)
               

               
               643-837, gnl|dasNov1|scaffold_49369 (9504-9704)
               

               
               643-837, gnl|echTel1|scaffold_78839 (263-467)
               

               
               643-837, gnl|galGal2|chr8 (14764781-14764577)
               

               
               643-837, gnl|hg17|chr1 (91912350-91912554)
               

               
               643-837, gnl|Hg17|chr1 (91912543-91912349)
               

               
               643-837, gnl|mm7|chr5 (106331586-106331790)
               

               
               643-837, gnl|Mm7|chr5 (106331779-106331585)
               

               
               643-837, gnl|monDom2|scaffold_87 (1874503-1874299)
               

               
               643-837, gnl|oryCun1|scaffold_200956 (179619-179822)
               

               
               643-837, gnl|panTro1|chr1 (90868843-90869047)
               

               
               643-837, gnl|rheMac2|chr1 (94727308-94727512)
               

               
               643-837, gnl|rn3|chr14 (3178804-3178600)
               

               
               643-837, gnl|tetNig1|chr1_random (590261-590462)
               

               
               643-837, gnl|xenTro1|scaffold_36 (3111168-3110964)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-516, gnl|bosTau2|chr3 (41924360-41924808)
               

               
               71-516, gnl|Hg17|chr1 (91937097-91936646)
               


               
               643-837, gnl|bosTau2|chr3 (41948521-41948715)
               

               
               643-837, gnl|canFam2|chr6 (60222247-60222043)
               

               
               643-837, gnl|danRer3|chrNA (180348379-180348579)
               

               
               643-837, gnl|dasNov1|scaffold_49369 (9504-9704)
               

               
               643-837, gnl|echTel1|scaffold_78839 (263-467)
               

               
               643-837, gnl|galGal2|chr8 (14764781-14764577)
               

               
               643-837, gnl|hg17|chr1 (91912350-91912554)
               

               
               643-837, gnl|Hg17|chr1 (91912543-91912349)
               

               
               643-837, gnl|mm7|chr5 (106331586-106331790)
               

               
               643-837, gnl|Mm7|chr5 (106331779-106331585)
               

               
               643-837, gnl|monDom2|scaffold_87 (1874503-1874299)
               

               
               643-837, gnl|oryCun1|scaffold_200956 (179619-179822)
               

               
               643-837, gnl|panTro1|chr1 (90868843-90869047)
               

               
               643-837, gnl|rheMac2|chr1 (94727308-94727512)
               

               
               643-837, gnl|rn3|chr14 (3178804-3178600)
               

               
               643-837, gnl|tetNig1|chr1_random (590261-590462)
               

               
               643-837, gnl|xenTro1|scaffold_36 (3111168-3110964)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cga (0.279096)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)

	71-516, gnl\|bosTau2\|chr3 (41924360-41924808)
	71-516, gnl\|Hg17\|chr1 (91937097-91936646)

	643-837, gnl\|bosTau2\|chr3 (41948521-41948715)
	643-837, gnl\|canFam2\|chr6 (60222247-60222043)
	643-837, gnl\|danRer3\|chrNA (180348379-180348579)
	643-837, gnl\|dasNov1\|scaffold_49369 (9504-9704)
	643-837, gnl\|echTel1\|scaffold_78839 (263-467)
	643-837, gnl\|galGal2\|chr8 (14764781-14764577)
	643-837, gnl\|hg17\|chr1 (91912350-91912554)
	643-837, gnl\|Hg17\|chr1 (91912543-91912349)
	643-837, gnl\|mm7\|chr5 (106331586-106331790)
	643-837, gnl\|Mm7\|chr5 (106331779-106331585)
	643-837, gnl\|monDom2\|scaffold_87 (1874503-1874299)
	643-837, gnl\|oryCun1\|scaffold_200956 (179619-179822)
	643-837, gnl\|panTro1\|chr1 (90868843-90869047)
	643-837, gnl\|rheMac2\|chr1 (94727308-94727512)
	643-837, gnl\|rn3\|chr14 (3178804-3178600)
	643-837, gnl\|tetNig1\|chr1_random (590261-590462)
	643-837, gnl\|xenTro1\|scaffold_36 (3111168-3110964)