Non-Coding RNA Search

Ss1.1-rcga34b_g12.5

Sequence:


               
               CATCTATGTCATCGCCCTGGCTGTGTGTCAGTGCCGACGAAAGAACTGTGGGCAGCTGGA
CATCTTTCCGACCCGGGATGCCTACCATCCTATGAGCGAGTACCCCACCTACCACACCCA
TGGGCGCTATGTGCCCCCCGGCAGTACCAAACGGAACCCCTATGAGCAGGTTTCTGCAGG
CAACGGTGGGGGCAGCCTCTCTTACTCGAACCTGGCAGCCACTTCTGCCAACTTGTAGGG
GCACATTGCCGGCTGAGCGCCCAGCCAATGCCAGCTGCCTCCCTGAGGTTCTTCCCTGCT
GGAGCCCCCGCCCCCAACTCTGTCCTGGGCTGATGAGCTGGGAGCACAGGTGGGCTGCCC
ACAATCTTTCTCAGAGGCCCCACCAAGTCCCCTAACCCATCTGAGCCCCAGCGAAGTCCA
TCCGAGCCTGGGGGACATTCCTGAGGCAGTGGCACCCAGGAGGACTGCCTGGAAAATTCC
AAGATGGGAGTGGGAACCTGACCGTGGCTGAATAAAACGTGGGCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCTATGTCATCGCCCTGGCTGTGTGTCAGTGCCGACGAAAGAACTGTGGGCAGCTGGA
CATCTTTCCGACCCGGGATGCCTACCATCCTATGAGCGAGTACCCCACCTACCACACCCA
TGGGCGCTATGTGCCCCCCGGCAGTACCAAACGGAACCCCTATGAGCAGGTTTCTGCAGG
CAACGGTGGGGGCAGCCTCTCTTACTCGAACCTGGCAGCCACTTCTGCCAACTTGTAGGG
GCACATTGCCGGCTGAGCGCCCAGCCAATGCCAGCTGCCTCCCTGAGGTTCTTCCCTGCT
GGAGCCCCCGCCCCCAACTCTGTCCTGGGCTGATGAGCTGGGAGCACAGGTGGGCTGCCC
ACAATCTTTCTCAGAGGCCCCACCAAGTCCCCTAACCCATCTGAGCCCCAGCGAAGTCCA
TCCGAGCCTGGGGGACATTCCTGAGGCAGTGGCACCCAGGAGGACTGCCTGGAAAATTCC
AAGATGGGAGTGGGAACCTGACCGTGGCTGAATAAAACGTGGGCCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q66US6_CANFA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q66US6_CANFA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               207-313, - strand, RNAz p=0.943969

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-313, - strand, RNAz p=0.943969

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               168-528, gnl|bosTau2|chr3 (9256927-9256565)
               

               
               168-528, gnl|Hg17|chr1 (151971760-151971383)
               

               
               168-528, gnl|Mm7|chr3 (89359431-89359781)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               168-528, gnl|bosTau2|chr3 (9256927-9256565)
               

               
               168-528, gnl|Hg17|chr1 (151971760-151971383)
               

               
               168-528, gnl|Mm7|chr3 (89359431-89359781)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cga (0.558191)
               

               
               mcp (0.170648)
               

               
               cst (0.140036)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.558191)
               

               
               mcp (0.170648)
               

               
               cst (0.140036)

	168-528, gnl\|bosTau2\|chr3 (9256927-9256565)
	168-528, gnl\|Hg17\|chr1 (151971760-151971383)
	168-528, gnl\|Mm7\|chr3 (89359431-89359781)