Non-Coding RNA Search

Ss1.1-rcga37b_h13.5

Sequence:


               
               TGCGGGATAAACAAAATCAGATTTGAGTGTCTAAAAGGGGCTAAAGAAAGAAGGATGAGG
AGCTTGAGCCAGAGCATGGAGGAAGCAGGCAGAAGTGAAACTGACCTCTCACTTTCTATG
GGACAGGAACGCTTTTTTACAAAGTATGAGTAGTGACCAGCCCTTTTCTCCACCCCCTTT
CCCTCAGTTAATTGGAACTCAGCCAGGTGGTTATTTGTACAGCACTGAAATGAAATCAAA
GATGTAAAAGCATTGATCATATTCAAAGATTGAAGCACGCTCATACTTCGTATGTGCTTT
GGGGGAGGGGGTGGGTGGGCACTTGGGCCTTGCGGGTGCATTCATGTAATCTGACTCTTG
AGCTTTATGATGGAGTCTTCAATATTTTGATGTATATGAAACTTTTGTTAATACATTGTA
TACTGTGTTGGCCGTGTGAAGTAAACTAAAACTCTGATGAACACTTTGGAATCTTCCTTA
GTGTAGGAGACCAAAGTGGGAAGGGCTTTAGGGCACTGAGGAAGGCCCTAAGTGTACTTT
TCAATCCTGTGTAATGTTTAATTCTTGCAACTGAATCAAAACAGTGTTAAATTATGGCAA
TATTTGCACTTTGGGAATGAGTACATAACTGTATGATCACACTTTGCAAATGCCACTTTT
AAAGCTGTTAATAGACTTTGCACCTTTTCTTTGACAAGGATGTGTCATATTTAAATTTTT
ACATTCATCATGGCTACAGGTAGAACTGGGGAGGGGGAATGTAATTTTTTATGGGAATTT
TGATATGAAAAGAAACTAGTCATTTATTTATACAATAGGCTTGGCTCAAAAAGTGTTTTT
CAGACTCGGTATTCCTAATGTGGGATGTGACTTTATTTTATTTTTAGTAGCAAATTTGGA
TGTAGACTGACAGACATAGCTGAATGTCTTAATAAATTTAAATTTGAAGATAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGGGATAAACAAAATCAGATTTGAGTGTCTAAAAGGGGCTAAAGAAAGAAGGATGAGG
AGCTTGAGCCAGAGCATGGAGGAAGCAGGCAGAAGTGAAACTGACCTCTCACTTTCTATG
GGACAGGAACGCTTTTTTACAAAGTATGAGTAGTGACCAGCCCTTTTCTCCACCCCCTTT
CCCTCAGTTAATTGGAACTCAGCCAGGTGGTTATTTGTACAGCACTGAAATGAAATCAAA
GATGTAAAAGCATTGATCATATTCAAAGATTGAAGCACGCTCATACTTCGTATGTGCTTT
GGGGGAGGGGGTGGGTGGGCACTTGGGCCTTGCGGGTGCATTCATGTAATCTGACTCTTG
AGCTTTATGATGGAGTCTTCAATATTTTGATGTATATGAAACTTTTGTTAATACATTGTA
TACTGTGTTGGCCGTGTGAAGTAAACTAAAACTCTGATGAACACTTTGGAATCTTCCTTA
GTGTAGGAGACCAAAGTGGGAAGGGCTTTAGGGCACTGAGGAAGGCCCTAAGTGTACTTT
TCAATCCTGTGTAATGTTTAATTCTTGCAACTGAATCAAAACAGTGTTAAATTATGGCAA
TATTTGCACTTTGGGAATGAGTACATAACTGTATGATCACACTTTGCAAATGCCACTTTT
AAAGCTGTTAATAGACTTTGCACCTTTTCTTTGACAAGGATGTGTCATATTTAAATTTTT
ACATTCATCATGGCTACAGGTAGAACTGGGGAGGGGGAATGTAATTTTTTATGGGAATTT
TGATATGAAAAGAAACTAGTCATTTATTTATACAATAGGCTTGGCTCAAAAAGTGTTTTT
CAGACTCGGTATTCCTAATGTGGGATGTGACTTTATTTTATTTTTAGTAGCAAATTTGGA
TGTAGACTGACAGACATAGCTGAATGTCTTAATAAATTTAAATTTGAAGATAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               427-624, + strand, RNAz p=0.948252

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               427-624, + strand, RNAz p=0.948252

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               447-581, + strand, RNAmicro p=0.999983
               

               
               424-559, - strand, RNAmicro p=0.972873

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               447-581, + strand, RNAmicro p=0.999983
               

               
               424-559, - strand, RNAmicro p=0.972873

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BX537635, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX537635, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-953, gnl|bosTau2|chr7 (47792322-47791372)
               

               
               4-953, gnl|Hg17|chr5 (158517954-158516995)
               

               
               4-953, gnl|Mm7|chr11 (44521331-44522273)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-953, gnl|bosTau2|chr7 (47792322-47791372)
               

               
               4-953, gnl|Hg17|chr5 (158517954-158516995)
               

               
               4-953, gnl|Mm7|chr11 (44521331-44522273)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               fcc (0.39557)
               

               
               gul (0.355177)
               

               
               eye (0.341006)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               gul (0.355177)
               

               
               eye (0.341006)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	447-581, + strand, RNAmicro p=0.999983
	424-559, - strand, RNAmicro p=0.972873

	4-953, gnl\|bosTau2\|chr7 (47792322-47791372)
	4-953, gnl\|Hg17\|chr5 (158517954-158516995)
	4-953, gnl\|Mm7\|chr11 (44521331-44522273)

	fcc (0.39557)
	gul (0.355177)
	eye (0.341006)
	cga (0.279096)
	cbe (0.239234)
	med (0.232504)
	sag (0.182715)
	sto (0.179824)
	fty (0.17584)
	ill (0.175593)
	nco (0.161734)
	hyp (0.142837)
	ste (0.135208)
	nmm (0.132802)
	kid (0.129735)
	eru (0.120048)
	ebs (0.118301)