Non-Coding RNA Search

Ss1.1-rche01_f11.5

Sequence:


               
               CCCAAATATGTGACTCACTAAGAAACTTTTGCTATAAAAGGCTTTTGATGCGATCTTAGC
AAAGCTGAAGCAATGTCTTTCGAATTTAGAGATTCCTGTAAACTCAGGTCATTCTTATAC
CCTGTTTATTTTGTAGGTCTATTTAGTTCTCAGGAGAATTAAACTCATGTCTCGTGACTG
TATCGTTAAAGGTTTTTGAGCCTATGTTGTTGTGGGTGGTATGACACTCAAATGCCTAAG
AGCTTTAAGGGATTCATACTTAACCACTAGACAGCCCTTTTTACCTGAGAAGAGCAAAAT
CAAATCTTTTTAATTGGATATTGAAGAAGAAAAGTAAGTTCCCATAGCTATTAGGATATA
TGTGCTTCCCTTTTTTCATATTGAGGGGAAAAAAATCAAATTTAACCACATGAAAGTTAT
TTGAATTCTTGAAAAGAAAAACATTCAAAACCACTTTTTCAGGAGTTCCTGTCGTGGCGC
AGTGGTTAACGAATCCGACTAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAAATATGTGACTCACTAAGAAACTTTTGCTATAAAAGGCTTTTGATGCGATCTTAGC
AAAGCTGAAGCAATGTCTTTCGAATTTAGAGATTCCTGTAAACTCAGGTCATTCTTATAC
CCTGTTTATTTTGTAGGTCTATTTAGTTCTCAGGAGAATTAAACTCATGTCTCGTGACTG
TATCGTTAAAGGTTTTTGAGCCTATGTTGTTGTGGGTGGTATGACACTCAAATGCCTAAG
AGCTTTAAGGGATTCATACTTAACCACTAGACAGCCCTTTTTACCTGAGAAGAGCAAAAT
CAAATCTTTTTAATTGGATATTGAAGAAGAAAAGTAAGTTCCCATAGCTATTAGGATATA
TGTGCTTCCCTTTTTTCATATTGAGGGGAAAAAAATCAAATTTAACCACATGAAAGTTAT
TTGAATTCTTGAAAAGAAAAACATTCAAAACCACTTTTTCAGGAGTTCCTGTCGTGGCGC
AGTGGTTAACGAATCCGACTAGGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-344, + strand, RNAz p=0.602207

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-344, + strand, RNAz p=0.602207

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-437, gnl|bosTau2|chr10 (46097325-46097765)
               

               
               2-437, gnl|Hg17|chr14 (52581178-52580710)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-437, gnl|bosTau2|chr10 (46097325-46097765)
               

               
               2-437, gnl|Hg17|chr14 (52581178-52580710)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nje (0.16592)
               

               
               che (0.136314)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               che (0.136314)

	2-437, gnl\|bosTau2\|chr10 (46097325-46097765)
	2-437, gnl\|Hg17\|chr14 (52581178-52580710)