Non-Coding RNA Search

Ss1.1-rche01_p21.5

Sequence:


               
               CCTTTGAATAATTCTACCAAGGCCTCATGTCTCTACTCTGCCATAACAAAGGCTGTGGGC
AACACTTTGATCCCCAAACCAACCTTCCTGATTCCTGTTGCCATCACCCTGGGGTCCCAG
TCTTCCATGATGCACTTAAGGGTTGGTCCTGCTGCCGGAAGCGAACTGTAGATTTCTCTG
AGTTCTTAAATATCAAGGGCTGTACTGTGGGACCCCACTGTGCTGAGAAGCTCCCTGAAG
CCCCTCAACCTGAGGGCCCTGCAACAAGCAGTTCACTTCTGGAGCAAAAGCCTCCGAATA
CGATTCCAAAGTCAGCAGAGACGTTGCGCCGGGAGAGGCCCAAGTCAGATCTGCCTCCAA
AGCTGCTTCCACTAAATATATCCCAAGCCCTGGAAATGGCACTGGAACAGAAGGAATTAG
ACCAAGAACCTGGAGCAGGTAAGTGGGTCCTTCATAGGACAGGTTTTGGGATTTCCCTTA
TGTCTCATAATGTAACTACACGGCATTACTTCTACAGTGGCTGTGGCTCGACCCCCTGGC
TCAGGAACTTCCATATGCCGCAGGTGCGGCCACTTGTTGTTTAAAAAAAAAAAAAAAAAA
GACAGGTCTTGTATACTGGAATTTAGTGAAAATGGCAGTTGGGTAGAGAAAATGAATAGG
TTCCTGACCCTGTTTCCTTTGCCCAGGACTTGACAGTAGTCTGATCCAGACTGGTGCCAG
CTGCCAGAACCCAGGATGTGATGCTGTGAGTGTGTGGAGGACTCAAGCATGTGGCTGAGA
GATGCTACACCTGAGGGATGACTGGGTATAGGTATGGGGCTGCATGGGTACATTTTAAAA
TGACTCGATTCTTTTCCTGATTCTCCTTTATCTGTCTTAGGTTTACCAAGGCTCGGAGAG
TGATGCTACTCCCTGTACCTACCACCCAGGAGCACCTCGATTCCATGAGGGGTGATGGAG
GGGACTGGGTGGGCTGTGAGACAGGTTTCTCCCAATGTTGATCACAAGATGGAAGTGGGG
GGCTTCTGGGGAGGGAAAAGGAGATTCAGTTGAATCGTGTTCCTACCTCAGGATGAAGTC
TTGGAGCTGTTGTGGCATCCAGACCCTGGATTTTGGGGTATTTCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTGAATAATTCTACCAAGGCCTCATGTCTCTACTCTGCCATAACAAAGGCTGTGGGC
AACACTTTGATCCCCAAACCAACCTTCCTGATTCCTGTTGCCATCACCCTGGGGTCCCAG
TCTTCCATGATGCACTTAAGGGTTGGTCCTGCTGCCGGAAGCGAACTGTAGATTTCTCTG
AGTTCTTAAATATCAAGGGCTGTACTGTGGGACCCCACTGTGCTGAGAAGCTCCCTGAAG
CCCCTCAACCTGAGGGCCCTGCAACAAGCAGTTCACTTCTGGAGCAAAAGCCTCCGAATA
CGATTCCAAAGTCAGCAGAGACGTTGCGCCGGGAGAGGCCCAAGTCAGATCTGCCTCCAA
AGCTGCTTCCACTAAATATATCCCAAGCCCTGGAAATGGCACTGGAACAGAAGGAATTAG
ACCAAGAACCTGGAGCAGGTAAGTGGGTCCTTCATAGGACAGGTTTTGGGATTTCCCTTA
TGTCTCATAATGTAACTACACGGCATTACTTCTACAGTGGCTGTGGCTCGACCCCCTGGC
TCAGGAACTTCCATATGCCGCAGGTGCGGCCACTTGTTGTTTAAAAAAAAAAAAAAAAAA
GACAGGTCTTGTATACTGGAATTTAGTGAAAATGGCAGTTGGGTAGAGAAAATGAATAGG
TTCCTGACCCTGTTTCCTTTGCCCAGGACTTGACAGTAGTCTGATCCAGACTGGTGCCAG
CTGCCAGAACCCAGGATGTGATGCTGTGAGTGTGTGGAGGACTCAAGCATGTGGCTGAGA
GATGCTACACCTGAGGGATGACTGGGTATAGGTATGGGGCTGCATGGGTACATTTTAAAA
TGACTCGATTCTTTTCCTGATTCTCCTTTATCTGTCTTAGGTTTACCAAGGCTCGGAGAG
TGATGCTACTCCCTGTACCTACCACCCAGGAGCACCTCGATTCCATGAGGGGTGATGGAG
GGGACTGGGTGGGCTGTGAGACAGGTTTCTCCCAATGTTGATCACAAGATGGAAGTGGGG
GGCTTCTGGGGAGGGAAAAGGAGATTCAGTTGAATCGTGTTCCTACCTCAGGATGAAGTC
TTGGAGCTGTTGTGGCATCCAGACCCTGGATTTTGGGGTATTTCTGGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               196-345, - strand, RNAz p=0.93786
               

               
               718-831, - strand, RNAz p=0.992424
               

               
               983-1128, + strand, RNAz p=0.908735

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-345, - strand, RNAz p=0.93786
               

               
               718-831, - strand, RNAz p=0.992424
               

               
               983-1128, + strand, RNAz p=0.908735

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               196-345, gnl|bosTau2|chrX (22098112-22098261)
               

               
               196-345, gnl|canFam2|chrX (58559701-58559893)
               

               
               196-345, gnl|dasNov1|scaffold_23023 (14246-14060)
               

               
               196-345, gnl|echTel1|scaffold_317837 (42289-42479)
               

               
               196-345, gnl|fr1|chrUn (301996719-301996532)
               

               
               196-345, gnl|hg17|chrX (70305252-70305443)
               

               
               196-345, gnl|Hg17|chrX (70305280-70305429)
               

               
               196-345, gnl|loxAfr1|scaffold_128595 (4236-4047)
               

               
               196-345, gnl|mm7|chrX (96777064-96777251)
               

               
               196-345, gnl|Mm7|chrX (96777094-96777243)
               

               
               196-345, gnl|oryCun1|scaffold_111872 (535-727)
               

               
               196-345, gnl|panTro1|chrX (72503089-72503281)
               

               
               196-345, gnl|rheMac2|chrX (70199840-70200032)
               

               
               196-345, gnl|rn3|chrX (89594759-89594942)
               


               
               601-1128, gnl|bosTau2|chrX (22099072-22099601)
               

               
               601-1128, gnl|Hg17|chrX (70306247-70306739)
               

               
               601-1128, gnl|Mm7|chrX (96779056-96779526)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-345, gnl|bosTau2|chrX (22098112-22098261)
               

               
               196-345, gnl|canFam2|chrX (58559701-58559893)
               

               
               196-345, gnl|dasNov1|scaffold_23023 (14246-14060)
               

               
               196-345, gnl|echTel1|scaffold_317837 (42289-42479)
               

               
               196-345, gnl|fr1|chrUn (301996719-301996532)
               

               
               196-345, gnl|hg17|chrX (70305252-70305443)
               

               
               196-345, gnl|Hg17|chrX (70305280-70305429)
               

               
               196-345, gnl|loxAfr1|scaffold_128595 (4236-4047)
               

               
               196-345, gnl|mm7|chrX (96777064-96777251)
               

               
               196-345, gnl|Mm7|chrX (96777094-96777243)
               

               
               196-345, gnl|oryCun1|scaffold_111872 (535-727)
               

               
               196-345, gnl|panTro1|chrX (72503089-72503281)
               

               
               196-345, gnl|rheMac2|chrX (70199840-70200032)
               

               
               196-345, gnl|rn3|chrX (89594759-89594942)
               


               
               601-1128, gnl|bosTau2|chrX (22099072-22099601)
               

               
               601-1128, gnl|Hg17|chrX (70306247-70306739)
               

               
               601-1128, gnl|Mm7|chrX (96779056-96779526)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               hlv (0.278513)
               

               
               nms (0.213858)
               

               
               che (0.136314)
               

               
               eru (0.120048)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hlv (0.278513)
               

               
               nms (0.213858)
               

               
               che (0.136314)
               

               
               eru (0.120048)

	196-345, - strand, RNAz p=0.93786
	718-831, - strand, RNAz p=0.992424
	983-1128, + strand, RNAz p=0.908735

	196-345, gnl\|bosTau2\|chrX (22098112-22098261)
	196-345, gnl\|canFam2\|chrX (58559701-58559893)
	196-345, gnl\|dasNov1\|scaffold_23023 (14246-14060)
	196-345, gnl\|echTel1\|scaffold_317837 (42289-42479)
	196-345, gnl\|fr1\|chrUn (301996719-301996532)
	196-345, gnl\|hg17\|chrX (70305252-70305443)
	196-345, gnl\|Hg17\|chrX (70305280-70305429)
	196-345, gnl\|loxAfr1\|scaffold_128595 (4236-4047)
	196-345, gnl\|mm7\|chrX (96777064-96777251)
	196-345, gnl\|Mm7\|chrX (96777094-96777243)
	196-345, gnl\|oryCun1\|scaffold_111872 (535-727)
	196-345, gnl\|panTro1\|chrX (72503089-72503281)
	196-345, gnl\|rheMac2\|chrX (70199840-70200032)
	196-345, gnl\|rn3\|chrX (89594759-89594942)

	601-1128, gnl\|bosTau2\|chrX (22099072-22099601)
	601-1128, gnl\|Hg17\|chrX (70306247-70306739)
	601-1128, gnl\|Mm7\|chrX (96779056-96779526)