Non-Coding RNA Search

Ss1.1-rche11_c7.5

Sequence:


               
               TTTCTTGGTTTGGGTTTTTTAATGCCAGTTCTCCGTAATAAGTGCATTTCGAAAGAGAGG
TTCCAGCTATCACTTGTAACCATATATATACATATATATTCTATCTACAAAGTGTTTATT
TGCAAGATGTTTTGACGGTGAGCTTGGGCCCTGCCCGCCTTGTGACCATCTGTCCCCGGT
CCTCGTCCCCGCTCTCCGGCCCGAGTGGCGCGGGGGCGGGCCATCAACTGTATGTATTAA
AAATGACTGTATCAAATAAATGTTTATTAATTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTGGTTTGGGTTTTTTAATGCCAGTTCTCCGTAATAAGTGCATTTCGAAAGAGAGG
TTCCAGCTATCACTTGTAACCATATATATACATATATATTCTATCTACAAAGTGTTTATT
TGCAAGATGTTTTGACGGTGAGCTTGGGCCCTGCCCGCCTTGTGACCATCTGTCCCCGGT
CCTCGTCCCCGCTCTCCGGCCCGAGTGGCGCGGGGGCGGGCCATCAACTGTATGTATTAA
AAATGACTGTATCAAATAAATGTTTATTAATTTTTT

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-276, gnl|bosTau2|chr13 (35178437-35178720)
               

               
               1-276, gnl|canFam2|chr24 (50471932-50471579)
               

               
               1-276, gnl|echTel1|scaffold_295768 (6318-6697)
               

               
               1-276, gnl|Hg17|chr20 (62058785-62058505)
               

               
               1-276, gnl|hg17|chr9 (91868406-91868789)
               

               
               1-276, gnl|mm7|chr2 (182083371-182083024)
               

               
               1-276, gnl|Mm7|chr2 (182083278-182083024)
               

               
               1-276, gnl|monDom2|scaffold_1 (184803456-184802994)
               

               
               1-276, gnl|panTro1|chr11 (76039837-76040218)
               

               
               1-276, gnl|rheMac2|chr15 (103838037-103838401)
               

               
               1-276, gnl|rn3|chr3 (170627367-170627020)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-276, gnl|bosTau2|chr13 (35178437-35178720)
               

               
               1-276, gnl|canFam2|chr24 (50471932-50471579)
               

               
               1-276, gnl|echTel1|scaffold_295768 (6318-6697)
               

               
               1-276, gnl|Hg17|chr20 (62058785-62058505)
               

               
               1-276, gnl|hg17|chr9 (91868406-91868789)
               

               
               1-276, gnl|mm7|chr2 (182083371-182083024)
               

               
               1-276, gnl|Mm7|chr2 (182083278-182083024)
               

               
               1-276, gnl|monDom2|scaffold_1 (184803456-184802994)
               

               
               1-276, gnl|panTro1|chr11 (76039837-76040218)
               

               
               1-276, gnl|rheMac2|chr15 (103838037-103838401)
               

               
               1-276, gnl|rn3|chr3 (170627367-170627020)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	1-276, gnl\|bosTau2\|chr13 (35178437-35178720)
	1-276, gnl\|canFam2\|chr24 (50471932-50471579)
	1-276, gnl\|echTel1\|scaffold_295768 (6318-6697)
	1-276, gnl\|Hg17\|chr20 (62058785-62058505)
	1-276, gnl\|hg17\|chr9 (91868406-91868789)
	1-276, gnl\|mm7\|chr2 (182083371-182083024)
	1-276, gnl\|Mm7\|chr2 (182083278-182083024)
	1-276, gnl\|monDom2\|scaffold_1 (184803456-184802994)
	1-276, gnl\|panTro1\|chr11 (76039837-76040218)
	1-276, gnl\|rheMac2\|chr15 (103838037-103838401)
	1-276, gnl\|rn3\|chr3 (170627367-170627020)