Non-Coding RNA Search

Ss1.1-rche11_o2.5

Sequence:


               
               GGGAACTCCACAAGGGTTCCTTTTTCAACCAACAATAACTGGGCCTCTTAGGCCAGAACA
CCTGTCTATTAGTTTTAGATACTTAGAAGCACATGCTGTTCTGTCCTGGCACTAACTTTT
GACTCCTGGAGCCTGTTTAGAAACACACCGCATTATGAACCCCGGCACAGCATCCCTGCC
TCCGCCACCGCCGCCACCACATTGTATCAACAAGACCCAAAAAGATGCAGAAGGTTTGCC
AGGCCGCTTTGTGTGGGTCCGTGGGCGGGCGAGGACACCTGCAAGAGCTCCTCACCACAC
AATCGGCTGCTCTGCCCCACCCAGGAGGTGCCCTCTGGGCGGGAGGAGAAAATGCGGGAC
GCCCGCCTGGGGTCTGAGCAGCACGGAGGAGGGTTAGGGCAGCAGACCTAAACCCGTCTG
CTTCCTTATCACCCGCAGCCCCGCAGCCATTTGGAAGGCACCAGAGTTGGCTGTCAATTA
CTTTTCTGAGCAGCTCTAGAACTCCGTGGGCATGCTAAGGAGAACAAAATCAGCAGTGGA
TGCTCTTCCTCACCCGCTTCTGTAGCCTCCGGTAATTTCGCAGTTAAAGCAGCCACTGCC
TCATTATCCCCATGAGAGCGAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAACTCCACAAGGGTTCCTTTTTCAACCAACAATAACTGGGCCTCTTAGGCCAGAACA
CCTGTCTATTAGTTTTAGATACTTAGAAGCACATGCTGTTCTGTCCTGGCACTAACTTTT
GACTCCTGGAGCCTGTTTAGAAACACACCGCATTATGAACCCCGGCACAGCATCCCTGCC
TCCGCCACCGCCGCCACCACATTGTATCAACAAGACCCAAAAAGATGCAGAAGGTTTGCC
AGGCCGCTTTGTGTGGGTCCGTGGGCGGGCGAGGACACCTGCAAGAGCTCCTCACCACAC
AATCGGCTGCTCTGCCCCACCCAGGAGGTGCCCTCTGGGCGGGAGGAGAAAATGCGGGAC
GCCCGCCTGGGGTCTGAGCAGCACGGAGGAGGGTTAGGGCAGCAGACCTAAACCCGTCTG
CTTCCTTATCACCCGCAGCCCCGCAGCCATTTGGAAGGCACCAGAGTTGGCTGTCAATTA
CTTTTCTGAGCAGCTCTAGAACTCCGTGGGCATGCTAAGGAGAACAAAATCAGCAGTGGA
TGCTCTTCCTCACCCGCTTCTGTAGCCTCCGGTAATTTCGCAGTTAAAGCAGCCACTGCC
TCATTATCCCCATGAGAGCGAGCG

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               17-351, gnl|bosTau2|chr10 (24178257-24177923)
               

               
               17-351, gnl|canFam2|chrX (13858378-13858822)
               

               
               17-351, gnl|dasNov1|scaffold_6929 (18029-18420)
               

               
               17-351, gnl|echTel1|scaffold_285872 (43480-43081)
               

               
               17-351, gnl|hg17|chrX (17609071-17609504)
               

               
               17-351, gnl|Hg17|chrX (17609139-17609498)
               

               
               17-351, gnl|mm7|chrX (156520922-156520497)
               

               
               17-351, gnl|Mm7|chrX (156520845-156520501)
               

               
               17-351, gnl|oryCun1|scaffold_198326 (136096-135699)
               

               
               17-351, gnl|panTro1|chrX (18203928-18204346)
               

               
               17-351, gnl|rheMac2|chrX (15553195-15553615)
               

               
               17-351, gnl|rn3|chrX (53863837-53864263)
               


               
               441-588, gnl|bosTau2|chr10 (24173535-24173390)
               

               
               441-588, gnl|Hg17|chrX (17609593-17609740)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-351, gnl|bosTau2|chr10 (24178257-24177923)
               

               
               17-351, gnl|canFam2|chrX (13858378-13858822)
               

               
               17-351, gnl|dasNov1|scaffold_6929 (18029-18420)
               

               
               17-351, gnl|echTel1|scaffold_285872 (43480-43081)
               

               
               17-351, gnl|hg17|chrX (17609071-17609504)
               

               
               17-351, gnl|Hg17|chrX (17609139-17609498)
               

               
               17-351, gnl|mm7|chrX (156520922-156520497)
               

               
               17-351, gnl|Mm7|chrX (156520845-156520501)
               

               
               17-351, gnl|oryCun1|scaffold_198326 (136096-135699)
               

               
               17-351, gnl|panTro1|chrX (18203928-18204346)
               

               
               17-351, gnl|rheMac2|chrX (15553195-15553615)
               

               
               17-351, gnl|rn3|chrX (53863837-53864263)
               


               
               441-588, gnl|bosTau2|chr10 (24173535-24173390)
               

               
               441-588, gnl|Hg17|chrX (17609593-17609740)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               che (0.272628)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)

	17-351, gnl\|bosTau2\|chr10 (24178257-24177923)
	17-351, gnl\|canFam2\|chrX (13858378-13858822)
	17-351, gnl\|dasNov1\|scaffold_6929 (18029-18420)
	17-351, gnl\|echTel1\|scaffold_285872 (43480-43081)
	17-351, gnl\|hg17\|chrX (17609071-17609504)
	17-351, gnl\|Hg17\|chrX (17609139-17609498)
	17-351, gnl\|mm7\|chrX (156520922-156520497)
	17-351, gnl\|Mm7\|chrX (156520845-156520501)
	17-351, gnl\|oryCun1\|scaffold_198326 (136096-135699)
	17-351, gnl\|panTro1\|chrX (18203928-18204346)
	17-351, gnl\|rheMac2\|chrX (15553195-15553615)
	17-351, gnl\|rn3\|chrX (53863837-53864263)

	441-588, gnl\|bosTau2\|chr10 (24173535-24173390)
	441-588, gnl\|Hg17\|chrX (17609593-17609740)