Ss1.1-rche12_j19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTGACATTCACCAATTTTGTCACGGAGCCCCTGAAGCATGTTGGGAAAGGAACTGGCG AATTTATTAAAGCGCTCATGAAGGAGATTCCGGTGTTACTGCAGGTGCCAGTGCTGATCA TTATGGCATTAGCCATCCTGATTTTCTGCTATGGTGCTGGAAAATCAGTTCCTATGCTGA GACATGTGGGTGGTCCTGAAAGAGAACCACCCCGGGCACTTGAGCCAGGTGGGGAAAGAA GAAGGCTCCAGGAGATTGATGCTAGACCCCATGGGGGAGCAGGTGATGCAGATTTCTATT ATAGGGGCCCCGTTGGCCCCATTGAGCCAAGCCCTTATGACAAAACATATGAGGGTAAAA AAGATGTTTTGAGAGAGAGAGATGTTGACTTGAGATTTCAGACTGGCCACAAGAGCCCTG AAGTGCTTCGGGCATTTGATTTACCAGACGCAGAGGCGAGAGAGCATCCCAAGGTGGTAC CCAGTCCTAAAGTACCTATTGTGGATACAAAACCCAAAGAGCTGGGTGGGACCCCAGGAG AAAGGACACCGACAGAAAGCAGCACCGAGAACCGCCAGTCGGCTCAGCCCGTCTCCGGAC CGAAGAGAGCAGAGGAGAGCGCGGCAGGCTCCCCTGTGCGGGAGGAAGCGCGGCCCAGCA CGGATGCCATGGGCGGCCGGGCAGGCGCAGCTGCAGCCACAGGGGGGACACGTGGAAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTGACATTCACCAATTTTGTCACGGAGCCCCTGAAGCATGTTGGGAAAGGAACTGGCG AATTTATTAAAGCGCTCATGAAGGAGATTCCGGTGTTACTGCAGGTGCCAGTGCTGATCA TTATGGCATTAGCCATCCTGATTTTCTGCTATGGTGCTGGAAAATCAGTTCCTATGCTGA GACATGTGGGTGGTCCTGAAAGAGAACCACCCCGGGCACTTGAGCCAGGTGGGGAAAGAA GAAGGCTCCAGGAGATTGATGCTAGACCCCATGGGGGAGCAGGTGATGCAGATTTCTATT ATAGGGGCCCCGTTGGCCCCATTGAGCCAAGCCCTTATGACAAAACATATGAGGGTAAAA AAGATGTTTTGAGAGAGAGAGATGTTGACTTGAGATTTCAGACTGGCCACAAGAGCCCTG AAGTGCTTCGGGCATTTGATTTACCAGACGCAGAGGCGAGAGAGCATCCCAAGGTGGTAC CCAGTCCTAAAGTACCTATTGTGGATACAAAACCCAAAGAGCTGGGTGGGACCCCAGGAG AAAGGACACCGACAGAAAGCAGCACCGAGAACCGCCAGTCGGCTCAGCCCGTCTCCGGAC CGAAGAGAGCAGAGGAGAGCGCGGCAGGCTCCCCTGTGCGGGAGGAAGCGCGGCCCAGCA CGGATGCCATGGGCGGCCGGGCAGGCGCAGCTGCAGCCACAGGGGGGACACGTGGAAAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 251-353, - strand, RNAz p=0.991124 | |
| 252-411, + strand, RNAz p=0.989212 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 251-353, - strand, RNAz p=0.991124 | |
| 252-411, + strand, RNAz p=0.989212 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 133-481, gnl|bosTau2|chr3 (31374100-31374445) | |
| 133-481, gnl|canFam2|chr6 (45884870-45884505) | |
| 133-481, gnl|dasNov1|scaffold_88441 (1879-1505) | |
| 133-481, gnl|galGal2|chr8 (1304604-1304918) | |
| 133-481, gnl|hg17|chr1 (109191733-109192098) | |
| 133-481, gnl|Hg17|chr1 (109192090-109191745) | |
| 133-481, gnl|loxAfr1|scaffold_141499 (4226-4586) | |
| 133-481, gnl|mm7|chr3 (108493261-108492911) | |
| 133-481, gnl|Mm7|chr3 (108492917-108493247) | |
| 133-481, gnl|monDom2|scaffold_0 (7780009-7779607) | |
| 133-481, gnl|oryCun1|scaffold_205806 (90561-90924) | |
| 133-481, gnl|panTro1|chr1 (108120350-108120715) | |
| 133-481, gnl|rheMac2|chr1 (111956205-111956570) | |
| 133-481, gnl|rn3|chr2 (204237751-204237388) | |
| 488-698, gnl|bosTau2|chr3 (31377344-31377555) | |
| 488-698, gnl|canFam2|chr6 (45887028-45886456) | |
| 488-698, gnl|dasNov1|scaffold_88441 (4467-3879) | |
| 488-698, gnl|hg17|chr1 (109189038-109189631) | |
| 488-698, gnl|Hg17|chr1 (109189604-109189393) | |
| 488-698, gnl|loxAfr1|scaffold_41204 (28221-28805) | |
| 488-698, gnl|mm7|chr3 (108495512-108494952) | |
| 488-698, gnl|Mm7|chr3 (108494975-108495163) | |
| 488-698, gnl|monDom2|scaffold_0 (7781915-7781252) | |
| 488-698, gnl|oryCun1|scaffold_205806 (87651-88197) | |
| 488-698, gnl|panTro1|chr1 (108117634-108118227) | |
| 488-698, gnl|rheMac2|chr1 (111949277-111949846) | |
| 488-698, gnl|rn3|chr2 (204239638-204239136) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 133-481, gnl|bosTau2|chr3 (31374100-31374445) | |
| 133-481, gnl|canFam2|chr6 (45884870-45884505) | |
| 133-481, gnl|dasNov1|scaffold_88441 (1879-1505) | |
| 133-481, gnl|galGal2|chr8 (1304604-1304918) | |
| 133-481, gnl|hg17|chr1 (109191733-109192098) | |
| 133-481, gnl|Hg17|chr1 (109192090-109191745) | |
| 133-481, gnl|loxAfr1|scaffold_141499 (4226-4586) | |
| 133-481, gnl|mm7|chr3 (108493261-108492911) | |
| 133-481, gnl|Mm7|chr3 (108492917-108493247) | |
| 133-481, gnl|monDom2|scaffold_0 (7780009-7779607) | |
| 133-481, gnl|oryCun1|scaffold_205806 (90561-90924) | |
| 133-481, gnl|panTro1|chr1 (108120350-108120715) | |
| 133-481, gnl|rheMac2|chr1 (111956205-111956570) | |
| 133-481, gnl|rn3|chr2 (204237751-204237388) | |
| 488-698, gnl|bosTau2|chr3 (31377344-31377555) | |
| 488-698, gnl|canFam2|chr6 (45887028-45886456) | |
| 488-698, gnl|dasNov1|scaffold_88441 (4467-3879) | |
| 488-698, gnl|hg17|chr1 (109189038-109189631) | |
| 488-698, gnl|Hg17|chr1 (109189604-109189393) | |
| 488-698, gnl|loxAfr1|scaffold_41204 (28221-28805) | |
| 488-698, gnl|mm7|chr3 (108495512-108494952) | |
| 488-698, gnl|Mm7|chr3 (108494975-108495163) | |
| 488-698, gnl|monDom2|scaffold_0 (7781915-7781252) | |
| 488-698, gnl|oryCun1|scaffold_205806 (87651-88197) | |
| 488-698, gnl|panTro1|chr1 (108117634-108118227) | |
| 488-698, gnl|rheMac2|chr1 (111949277-111949846) | |
| 488-698, gnl|rn3|chr2 (204239638-204239136) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) |