Non-Coding RNA Search

Ss1.1-rche12_n11.5

Sequence:


               
               GCTGCCCAGTCCTTGCAAGTCCAAAAGTTTGGGGGACTTGACATCAGAGGACATCGCCTG
CAATTTTGAAAGCAAGTACCAGTGTATTAGTAAGAGTTTTGTTACAACTGGTATCAGAGA
CAAGAAGGGCGTGACTGTGAAAACAAAGTCTTTAGAGCCTATAGATGCCCTAACCGAGCA
GCTGCGGAAGCTTGTGTCCTTTGACCAGGAAGACAGCTGCCAAGTGCTGTATTCCAAGCA
GGATGCCAATCAGTTTCCCAGGGCGCTAGTCAGAAAGTTGTCATCCAGAAGTCAGAGCAG
AGTGCGCAATATTGCCAGTCGTGCCAAGGAAAAGCAGGAAGCCAACAAGCAGAAAAGTGT
GAACCCCAGCACTGTGGGAGGAGTGGTTCTTCGAAGCAAACCCTGCGCTCCGGCACCTCC
GGGGAACCGGCACTCCACCGGCTCCTACATCGCTGGCTATCTGCGGAGCGCCAAGGGCAG
TGGCACTGAAGGCCGTGGCATCCCTGAGGGCGCATGCGCTGCCCTGCGCTCTGGCCATGC
CGATCAGTTTTGTTCACATCCTTCCATTTTGCAGACCCAGCCGAGCAGTGAGGATAAACC
AGAAATATATTTTCTTTTGAGACTGTGAATTTCTGCATTTTCAATGTTTACAAGGTATTC
TGTAGATTGTCTGAGTTTTCAGTTTTTCAGTAAAAATGTTCCTTGGCTTTGAGATTTTAT
AGTGTATTTTTAAACTTGTATTTCTGTCTCCCTTTGACTCCGTGTGTTCTTGTTTATGCA
TTTGTATATAGATTCGGGTGACCTTTCCCACATACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCCCAGTCCTTGCAAGTCCAAAAGTTTGGGGGACTTGACATCAGAGGACATCGCCTG
CAATTTTGAAAGCAAGTACCAGTGTATTAGTAAGAGTTTTGTTACAACTGGTATCAGAGA
CAAGAAGGGCGTGACTGTGAAAACAAAGTCTTTAGAGCCTATAGATGCCCTAACCGAGCA
GCTGCGGAAGCTTGTGTCCTTTGACCAGGAAGACAGCTGCCAAGTGCTGTATTCCAAGCA
GGATGCCAATCAGTTTCCCAGGGCGCTAGTCAGAAAGTTGTCATCCAGAAGTCAGAGCAG
AGTGCGCAATATTGCCAGTCGTGCCAAGGAAAAGCAGGAAGCCAACAAGCAGAAAAGTGT
GAACCCCAGCACTGTGGGAGGAGTGGTTCTTCGAAGCAAACCCTGCGCTCCGGCACCTCC
GGGGAACCGGCACTCCACCGGCTCCTACATCGCTGGCTATCTGCGGAGCGCCAAGGGCAG
TGGCACTGAAGGCCGTGGCATCCCTGAGGGCGCATGCGCTGCCCTGCGCTCTGGCCATGC
CGATCAGTTTTGTTCACATCCTTCCATTTTGCAGACCCAGCCGAGCAGTGAGGATAAACC
AGAAATATATTTTCTTTTGAGACTGTGAATTTCTGCATTTTCAATGTTTACAAGGTATTC
TGTAGATTGTCTGAGTTTTCAGTTTTTCAGTAAAAATGTTCCTTGGCTTTGAGATTTTAT
AGTGTATTTTTAAACTTGTATTTCTGTCTCCCTTTGACTCCGTGTGTTCTTGTTTATGCA
TTTGTATATAGATTCGGGTGACCTTTCCCACATACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51491299|emb|CAH18710.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51491299|emb|CAH18710.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-808, gnl|bosTau2|chr1 (71841695-71842501)
               

               
               1-808, gnl|Hg17|chr3 (156682086-156681275)
               

               
               1-808, gnl|Mm7|chr3 (63843829-63843030)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-808, gnl|bosTau2|chr1 (71841695-71842501)
               

               
               1-808, gnl|Hg17|chr3 (156682086-156681275)
               

               
               1-808, gnl|Mm7|chr3 (63843829-63843030)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               che (0.136314)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               che (0.136314)

	1-808, gnl\|bosTau2\|chr1 (71841695-71842501)
	1-808, gnl\|Hg17\|chr3 (156682086-156681275)
	1-808, gnl\|Mm7\|chr3 (63843829-63843030)