Non-Coding RNA Search

Ss1.1-rche12_p19.5

Sequence:


               
               CCCCCATGTCAGCGGCCCACCAGCTCCAGGCCATGCACGCCCAGTCAGCCGAGCTGCAGA
GACTGGCCATGGAGCAGCAGTGGCTGCATGGACACCCCCACATGCATGGCGGCCACCTAC
CCAGTCAGGAAGATTACTACAGTCGACTGAAGAAAGAAGGTGACAAGCAGTTATAAGTTA
TTTATTTGTTAACGCTGGCTGTGGAAACCCCAATTCTTGGGGGGAGAAACAGGACTTTTT
ACATACAGTAGGAGCTACAAAAGCAAAAAGAATATCTTCTAAAGATTTCTTTCTCTATTT
AAACCCCACACTGAGAATGTATCAGCGTGACGATAGTGTTCGTTTGTAGCGAGGATTCCT
TGAGACTGGTCGGGTCCCCTGCATGACGGTCCCCAGAAACTTAGTGAGGCCTGGACTGGA
CATTCAGAAAACGCCCCTGCAGTCTTGGGGTTTGGCTTTAGTTTGCTTTTCCTTCCTTGA
TTTCTTCAGTAGGTGCTAGACTCCAGTTCACACCCGTCACTGTGCGTGCAGACACACTCA
GTCGCGTGTGTTCCAGAACCCACAAGGTTTGCAGATAGGCAGCATATGAGTTTGGAATCC
AAGAGCTATAATTTTTAAAAAAAAATCTTTTATTTTAATACATTGTAGGAAATCTTCATA
ATTTGAGAAAATTCTGCAGCATGGCTTTTTACGTCTGTAAATACGTTTAGAACAGCCTTT
TTTTTCTTCCACAAACAACTATTCTGATCTATTTTTTTCCAGCCATGTCACTAATTGTGA
ATTCCTACCAGCTATTGACAGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCATGTCAGCGGCCCACCAGCTCCAGGCCATGCACGCCCAGTCAGCCGAGCTGCAGA
GACTGGCCATGGAGCAGCAGTGGCTGCATGGACACCCCCACATGCATGGCGGCCACCTAC
CCAGTCAGGAAGATTACTACAGTCGACTGAAGAAAGAAGGTGACAAGCAGTTATAAGTTA
TTTATTTGTTAACGCTGGCTGTGGAAACCCCAATTCTTGGGGGGAGAAACAGGACTTTTT
ACATACAGTAGGAGCTACAAAAGCAAAAAGAATATCTTCTAAAGATTTCTTTCTCTATTT
AAACCCCACACTGAGAATGTATCAGCGTGACGATAGTGTTCGTTTGTAGCGAGGATTCCT
TGAGACTGGTCGGGTCCCCTGCATGACGGTCCCCAGAAACTTAGTGAGGCCTGGACTGGA
CATTCAGAAAACGCCCCTGCAGTCTTGGGGTTTGGCTTTAGTTTGCTTTTCCTTCCTTGA
TTTCTTCAGTAGGTGCTAGACTCCAGTTCACACCCGTCACTGTGCGTGCAGACACACTCA
GTCGCGTGTGTTCCAGAACCCACAAGGTTTGCAGATAGGCAGCATATGAGTTTGGAATCC
AAGAGCTATAATTTTTAAAAAAAAATCTTTTATTTTAATACATTGTAGGAAATCTTCATA
ATTTGAGAAAATTCTGCAGCATGGCTTTTTACGTCTGTAAATACGTTTAGAACAGCCTTT
TTTTTCTTCCACAAACAACTATTCTGATCTATTTTTTTCCAGCCATGTCACTAATTGTGA
ATTCCTACCAGCTATTGACAGGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.656262

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.656262

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               4-103, - strand, RNAmicro p=0.999711

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               4-103, - strand, RNAmicro p=0.999711

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-142, gnl|bosTau2|chr16 (30479768-30479627)
               

               
               1-142, gnl|Hg17|chr1 (8349886-8349745)
               

               
               1-142, gnl|Mm7|chr4 (149608606-149608747)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-142, gnl|bosTau2|chr16 (30479768-30479627)
               

               
               1-142, gnl|Hg17|chr1 (8349886-8349745)
               

               
               1-142, gnl|Mm7|chr4 (149608606-149608747)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               che (0.545256)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               ctl (0.153069)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.545256)
               

               
               duo (0.172801)
               

               
               cki (0.165235)
               

               
               ctl (0.153069)
               

               
               nmm (0.132802)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-142, gnl\|bosTau2\|chr16 (30479768-30479627)
	1-142, gnl\|Hg17\|chr1 (8349886-8349745)
	1-142, gnl\|Mm7\|chr4 (149608606-149608747)

	che (0.545256)
	duo (0.172801)
	cki (0.165235)
	ctl (0.153069)
	nmm (0.132802)
	cly (0.120642)
	pgl (0.118483)
	ecc (0.115035)
	cty (0.10408)
	ldo (0.0970026)