Non-Coding RNA Search

Ss1.1-rche13_c1.5

Sequence:


               
               AATCCACCTCAATCCCAGATTCGACTGCACCTTGAATTATGCTGGCTCCGGAATGTCGCC
CCCCTTGTTGTTGCCCAAGGCTCTTGAGACTCCGGCCCTCTGAACGGAGAAGCCAAGTTC
AGCTCCAGGTTTCTGCACTGTTCCTTGTTCAGAGCTGACATATTTCACATGAAGTTGTGT
AGAAACAGACAAACCTGCATGGATAGTCAGGATTGCTGTGGCCCCTAGCTAGGCTCCCTT
CCTACAACCTGGTGGTGACAGGGACAGCTGCCGGTACCCTGCCCTTTGTTCAATGGTACG
CAGGGAGTGGGGGGTGGGAGGAGAGGCTGAGCTGAGGGCTGGAGGACAACAGCCACTGGG
TGTGCTGTTAACGGTTTATACTATTGTTTACTTTTCTGTGATTAAAAGTGCTTCAACCCT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATCCACCTCAATCCCAGATTCGACTGCACCTTGAATTATGCTGGCTCCGGAATGTCGCC
CCCCTTGTTGTTGCCCAAGGCTCTTGAGACTCCGGCCCTCTGAACGGAGAAGCCAAGTTC
AGCTCCAGGTTTCTGCACTGTTCCTTGTTCAGAGCTGACATATTTCACATGAAGTTGTGT
AGAAACAGACAAACCTGCATGGATAGTCAGGATTGCTGTGGCCCCTAGCTAGGCTCCCTT
CCTACAACCTGGTGGTGACAGGGACAGCTGCCGGTACCCTGCCCTTTGTTCAATGGTACG
CAGGGAGTGGGGGGTGGGAGGAGAGGCTGAGCTGAGGGCTGGAGGACAACAGCCACTGGG
TGTGCTGTTAACGGTTTATACTATTGTTTACTTTTCTGTGATTAAAAGTGCTTCAACCCT
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               221-422, + strand, RNAz p=0.933952

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               221-422, + strand, RNAz p=0.933952

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_147190, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_147190, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-422, gnl|bosTau2|chr5 (23000679-23001103)
               

               
               1-422, gnl|Hg17|chr12 (48810274-48809846)
               

               
               1-422, gnl|Mm7|chr15 (99721241-99720839)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-422, gnl|bosTau2|chr5 (23000679-23001103)
               

               
               1-422, gnl|Hg17|chr12 (48810274-48809846)
               

               
               1-422, gnl|Mm7|chr15 (99721241-99720839)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               med (0.116252)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.198649)
               

               
               aor (0.195274)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               med (0.116252)

	1-422, gnl\|bosTau2\|chr5 (23000679-23001103)
	1-422, gnl\|Hg17\|chr12 (48810274-48809846)
	1-422, gnl\|Mm7\|chr15 (99721241-99720839)

	nbm (0.198649)
	aor (0.195274)
	eye (0.170503)
	fhi (0.169578)
	lnt (0.142308)
	che (0.136314)
	med (0.116252)