Non-Coding RNA Search

Ss1.1-rche13_c4.5

Sequence:


               
               GAACCTGCAACCTCATGGTTCCTAGTCAGCTTCGTTTCCGCTGTGCCATGATGGGAGCTC
CGAAACAATTTTTTTTTTTTTAATCCATTTAGCAAAAACCTTGAAAAAACAGAGTTGAAG
GAATGCTCTAGAAACGTCCAGTGGCTCACCAAGGAAAAGCCCCCCTTGGGGCTGGCAAGA
CCTTAGCCTCTAACAGCACAGAGAAGTAAATACCTTTATCAGGCCACACGTGAATTAGCC
CAAAGAACCTTTGGTGGCTTTCGGTGTGTTTCTGTCATGCCATGTTGTAGGTGAGAACTT
CCTCTGTTCTGGCACTGCTATGGGTCTCTCAGATATGTTTGTGGGAGTCACATTTGCATC
ATGGAGGGGAAAGTCCATTCATCCTGGTTTAATTGAATTGAGAATGCCTTTTGTTTCCAG
GAAAGTATTGATCCCTAGGAAAGAGGAATAGATTCTTATCCCCAGAGGCATCTCTTCAGC
CCTTATAATCCTACCAGGACGAAAGCACTAAGGAAGACTTGATTTTTTTTTTTTTTTTTT
TTTTTAAGGCAACAGACTTAAAGTTGTCCTCAGCCAAGGAAAAATGATACTGCAACTTTA
AATTTTAAAGTATCTTGCACTGATAAATATATTTAAAAATTATATGTTTATAAAGTTATT
AATTTGTAAAGGCAGTGTTACAAAATGTTCAGTTTATATTGTTTTAGATTGTTTCGTAAT
TTTAAAAGGTGTGAAATAACATATTTTTTTCCTTTATTGAGATCTATAAAACTTTCTGTA
GTAAAATGTTTTCATTTTACTGATATATTATTGCTTCATGTTTTGTACCATCATAAAATT
TTGTGCAAATTTTTTTTACAGAAATTTTTATTTTTTATGCCAATATGACACTTGTAAATT
GTTTCAAAATGAACAGCGAAGCCTTAACTTTAAATGACATTTGTATTCTCAGACCCTGAG
TTGCATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCTGCAACCTCATGGTTCCTAGTCAGCTTCGTTTCCGCTGTGCCATGATGGGAGCTC
CGAAACAATTTTTTTTTTTTTAATCCATTTAGCAAAAACCTTGAAAAAACAGAGTTGAAG
GAATGCTCTAGAAACGTCCAGTGGCTCACCAAGGAAAAGCCCCCCTTGGGGCTGGCAAGA
CCTTAGCCTCTAACAGCACAGAGAAGTAAATACCTTTATCAGGCCACACGTGAATTAGCC
CAAAGAACCTTTGGTGGCTTTCGGTGTGTTTCTGTCATGCCATGTTGTAGGTGAGAACTT
CCTCTGTTCTGGCACTGCTATGGGTCTCTCAGATATGTTTGTGGGAGTCACATTTGCATC
ATGGAGGGGAAAGTCCATTCATCCTGGTTTAATTGAATTGAGAATGCCTTTTGTTTCCAG
GAAAGTATTGATCCCTAGGAAAGAGGAATAGATTCTTATCCCCAGAGGCATCTCTTCAGC
CCTTATAATCCTACCAGGACGAAAGCACTAAGGAAGACTTGATTTTTTTTTTTTTTTTTT
TTTTTAAGGCAACAGACTTAAAGTTGTCCTCAGCCAAGGAAAAATGATACTGCAACTTTA
AATTTTAAAGTATCTTGCACTGATAAATATATTTAAAAATTATATGTTTATAAAGTTATT
AATTTGTAAAGGCAGTGTTACAAAATGTTCAGTTTATATTGTTTTAGATTGTTTCGTAAT
TTTAAAAGGTGTGAAATAACATATTTTTTTCCTTTATTGAGATCTATAAAACTTTCTGTA
GTAAAATGTTTTCATTTTACTGATATATTATTGCTTCATGTTTTGTACCATCATAAAATT
TTGTGCAAATTTTTTTTACAGAAATTTTTATTTTTTATGCCAATATGACACTTGTAAATT
GTTTCAAAATGAACAGCGAAGCCTTAACTTTAAATGACATTTGTATTCTCAGACCCTGAG
TTGCATAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               84-970, gnl|bosTau2|chr13 (10403522-10402655)
               

               
               84-970, gnl|Hg17|chr10 (33507402-33506521)
               

               
               84-970, gnl|Mm7|chr8 (127113135-127113991)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-970, gnl|bosTau2|chr13 (10403522-10402655)
               

               
               84-970, gnl|Hg17|chr10 (33507402-33506521)
               

               
               84-970, gnl|Mm7|chr8 (127113135-127113991)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

	84-970, gnl\|bosTau2\|chr13 (10403522-10402655)
	84-970, gnl\|Hg17\|chr10 (33507402-33506521)
	84-970, gnl\|Mm7\|chr8 (127113135-127113991)

	aor (0.195274)
	gul (0.177588)
	rec (0.17307)
	duo (0.172801)
	nca (0.136874)
	che (0.136314)
	ese (0.126502)
	cty (0.10408)