Non-Coding RNA Search

Ss1.1-rche13_m15.5

Sequence:


               
               TTTAAGGGACAGCTGTGCGAAACATCTGTATCTAATTACTACAAAATGCGTTAGCACACG
TGGGAGGCTGCAGAGAGCGAGCGAGCCCGGAAACTCACCTCCATCTGCAGCGCCGCGACA
AGGGACCCTGTTTGCGGGACTACACGCTCCAAACCGGAGCCTGACCCTCTGCCCTCGAGC
CTGGTGAATTCGGCTGGCCTCCTGAGGGCCCTGTCACCGGACAGAGGGGCTCTCGCTCCT
CGGCTCTGCTCTGGGGGCCCTTCTCAGGCTCTGTCCTCCCGACAGAGGGTGCGGCGGCCA
GGCCCCGATGGAGGAGTGTCCCCGTCGTCCTCCTTAACTGTGACTCTCGGATCTTCCAGT
TTTGCATGCTGCAGGCATCTAGGACAGATTGCTTCACTAGAACCTGGAGACGTAGTGTCT
TTGATAGCATAAGCCAGACTGTGCGCGCTGCGGTGCGTGTACGCATGCGCGTGCGCGGAC
AGCATACCCATTAGTTCATTTACTCGCACACATGTGTGTGCGTGCATATACAGCCAAGTG
GTAACGTCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTAAGGGACAGCTGTGCGAAACATCTGTATCTAATTACTACAAAATGCGTTAGCACACG
TGGGAGGCTGCAGAGAGCGAGCGAGCCCGGAAACTCACCTCCATCTGCAGCGCCGCGACA
AGGGACCCTGTTTGCGGGACTACACGCTCCAAACCGGAGCCTGACCCTCTGCCCTCGAGC
CTGGTGAATTCGGCTGGCCTCCTGAGGGCCCTGTCACCGGACAGAGGGGCTCTCGCTCCT
CGGCTCTGCTCTGGGGGCCCTTCTCAGGCTCTGTCCTCCCGACAGAGGGTGCGGCGGCCA
GGCCCCGATGGAGGAGTGTCCCCGTCGTCCTCCTTAACTGTGACTCTCGGATCTTCCAGT
TTTGCATGCTGCAGGCATCTAGGACAGATTGCTTCACTAGAACCTGGAGACGTAGTGTCT
TTGATAGCATAAGCCAGACTGTGCGCGCTGCGGTGCGTGTACGCATGCGCGTGCGCGGAC
AGCATACCCATTAGTTCATTTACTCGCACACATGTGTGTGCGTGCATATACAGCCAAGTG
GTAACGTCTGTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               193-298, - strand, RNAz p=0.65428
               

               
               444-552, + strand, RNAz p=0.996847

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-298, - strand, RNAz p=0.65428
               

               
               444-552, + strand, RNAz p=0.996847

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               513-587, + strand, RNAmicro p=0.994857
               

               
               203-269, + strand, RNAmicro p=0.989137

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               513-587, + strand, RNAmicro p=0.994857
               

               
               203-269, + strand, RNAmicro p=0.989137

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK026786, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK026786, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-552, gnl|bosTau2|chr5 (63496782-63496217)
               

               
               1-552, gnl|Hg17|chr12 (3572556-3573141)
               

               
               1-552, gnl|Mm7|chr6 (127713117-127712531)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr5 (63496782-63496217)
               

               
               1-552, gnl|Hg17|chr12 (3572556-3573141)
               

               
               1-552, gnl|Mm7|chr6 (127713117-127712531)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.272628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)

	193-298, - strand, RNAz p=0.65428
	444-552, + strand, RNAz p=0.996847

	513-587, + strand, RNAmicro p=0.994857
	203-269, + strand, RNAmicro p=0.989137

	1-552, gnl\|bosTau2\|chr5 (63496782-63496217)
	1-552, gnl\|Hg17\|chr12 (3572556-3573141)
	1-552, gnl\|Mm7\|chr6 (127713117-127712531)