Ss1.1-rche13_o5.5
|
TACGCCACGCCTCGTCACGTGACGCTAGGGCCATTTAAAGCGGTAGCGCGGGCTGGGAGC
CGCCGGTCCTGGAATTTTTGCGCGCCTGTTCTGTCGTCTCTTTCTCAGCCTAGCCCAGCC
TCACCATGGTGGACGCCTTCGCGGGCACCTGGAAGCTAGTGGACAGCAAGAATTTCGATG
ACTACATGAAGTCAATTGGTGTGGGTTTTGCCACCAGGCAGGTGGCCAACATGACCAAGC
CTACCACAATCATCGAAGTGAATGGGGACACAATCATCATAAAAACACAAAGCACCTTCA
AGAGCACAGAGATCAGCTTCAAGCTGGGAGTGGAGTTTGATGAGACAACAGCAGATGACA
GGAAGGTCAAGTCCATTGTGACACTGGATGGAGGCAAACTTGTCCACCTGCAGAAGTGGA
ATGGACAAGAGACAACGCTTGTTCGGGAACTAGTTGATGGGAAACTCATCCTGACACTCA
CCCATGGCAGTGCAGTTTGCACTCGCACTTACGAGAAAGAGGCATGACCTGCCCATCCCT
TCGACTGTTCCTGCCAATTGGCTACTCCTGGACTCAGCACCAGATTGCCTCATTTTTTCC
TCTGGCATTTTGTAAAAATCTACTTTGGGGATATTCTCCTGGGGTCAGGTTGCACCAGCC
TGCGTTCAGTTCCGGTTCTTGTTGTGTATGTTTGTTTTTTTTTAATTGCATCCAAAGGGT
GCTCTGAGGTCAATAAAATAGCCAAGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TACGCCACGCCTCGTCACGTGACGCTAGGGCCATTTAAAGCGGTAGCGCGGGCTGGGAGC
CGCCGGTCCTGGAATTTTTGCGCGCCTGTTCTGTCGTCTCTTTCTCAGCCTAGCCCAGCC
TCACCATGGTGGACGCCTTCGCGGGCACCTGGAAGCTAGTGGACAGCAAGAATTTCGATG
ACTACATGAAGTCAATTGGTGTGGGTTTTGCCACCAGGCAGGTGGCCAACATGACCAAGC
CTACCACAATCATCGAAGTGAATGGGGACACAATCATCATAAAAACACAAAGCACCTTCA
AGAGCACAGAGATCAGCTTCAAGCTGGGAGTGGAGTTTGATGAGACAACAGCAGATGACA
GGAAGGTCAAGTCCATTGTGACACTGGATGGAGGCAAACTTGTCCACCTGCAGAAGTGGA
ATGGACAAGAGACAACGCTTGTTCGGGAACTAGTTGATGGGAAACTCATCCTGACACTCA
CCCATGGCAGTGCAGTTTGCACTCGCACTTACGAGAAAGAGGCATGACCTGCCCATCCCT
TCGACTGTTCCTGCCAATTGGCTACTCCTGGACTCAGCACCAGATTGCCTCATTTTTTCC
TCTGGCATTTTGTAAAAATCTACTTTGGGGATATTCTCCTGGGGTCAGGTTGCACCAGCC
TGCGTTCAGTTCCGGTTCTTGTTGTGTATGTTTGTTTTTTTTTAATTGCATCCAAAGGGT
GCTCTGAGGTCAATAAAATAGCCAAGGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
|
|
gi|2143386|emb|CAA67168.1| |
Protein identifier
|
gi|2143386|emb|CAA67168.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
195-371, gnl|bosTau2|chr14 (25665833-25665657) |
|
195-371, gnl|canFam2|chr29 (31655375-31655601) |
|
195-371, gnl|dasNov1|scaffold_1005 (3345-3561) |
|
195-371, gnl|echTel1|scaffold_308568 (10764-10552) |
|
195-371, gnl|hg17|chr8 (82555207-82555428) |
|
195-371, gnl|Hg17|chr8 (82555392-82555216) |
|
195-371, gnl|loxAfr1|scaffold_10783 (28758-28533) |
|
195-371, gnl|mm7|chr3 (10214126-10214346) |
|
195-371, gnl|Mm7|chr3 (10214311-10214135) |
|
195-371, gnl|monDom2|scaffold_4 (75884391-75884170) |
|
195-371, gnl|oryCun1|scaffold_204330 (53861-54081) |
|
195-371, gnl|panTro1|chr7 (84686930-84687150) |
|
195-371, gnl|rheMac2|chr8 (83922754-83922975) |
|
195-371, gnl|rn3|chr2 (93483724-93483503) |
|
195-371, gnl|xenTro1|scaffold_259 (1370165-1369959) |
| |
|
469-750, gnl|bosTau2|chr2 (75526368-75526077) |
|
469-750, gnl|Hg17|chr1 (31507884-31507596) |
|
469-750, gnl|Mm7|chr4 (129759814-129760106) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
195-371, gnl|bosTau2|chr14 (25665833-25665657) |
|
195-371, gnl|canFam2|chr29 (31655375-31655601) |
|
195-371, gnl|dasNov1|scaffold_1005 (3345-3561) |
|
195-371, gnl|echTel1|scaffold_308568 (10764-10552) |
|
195-371, gnl|hg17|chr8 (82555207-82555428) |
|
195-371, gnl|Hg17|chr8 (82555392-82555216) |
|
195-371, gnl|loxAfr1|scaffold_10783 (28758-28533) |
|
195-371, gnl|mm7|chr3 (10214126-10214346) |
|
195-371, gnl|Mm7|chr3 (10214311-10214135) |
|
195-371, gnl|monDom2|scaffold_4 (75884391-75884170) |
|
195-371, gnl|oryCun1|scaffold_204330 (53861-54081) |
|
195-371, gnl|panTro1|chr7 (84686930-84687150) |
|
195-371, gnl|rheMac2|chr8 (83922754-83922975) |
|
195-371, gnl|rn3|chr2 (93483724-93483503) |
|
195-371, gnl|xenTro1|scaffold_259 (1370165-1369959) |
| |
|
469-750, gnl|bosTau2|chr2 (75526368-75526077) |
|
469-750, gnl|Hg17|chr1 (31507884-31507596) |
|
469-750, gnl|Mm7|chr4 (129759814-129760106) |
|
cga (6.6983) |
|
mcp (4.43686) |
|
nms (2.99401) |
|
hlv (2.64587) |
|
hea (2.24949) |
|
fat (1.76913) |
|
mas (1.68244) |
|
mgm (1.44274) |
|
che (0.954198) |
|
ssp (0.948638) |
|
cst (0.840218) |
|
mgp (0.692042) |
|
clu (0.598229) |
|
med (0.58126) |
|
ste (0.540833) |
|
ldo (0.485013) |
|
isp (0.451128) |
|
nep (0.36785) |
|
ebs (0.354904) |
|
ton (0.351) |
|
duo (0.345602) |
|
eye (0.341006) |
|
cov (0.264306) |
|
cbr (0.255951) |
|
cly (0.241284) |
|
ece (0.229305) |
|
spc (0.226732) |
|
eje (0.197668) |
|
gul (0.177588) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
cki (0.165235) |
|
csp (0.161186) |
|
ctl (0.153069) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
pla (0.133672) |
|
tra (0.123092) |
|
eru (0.120048) |
|
jca (0.11396) |
|
nbm (0.0993246) |
|
cga (6.6983) |
|
mcp (4.43686) |
|
nms (2.99401) |
|
hlv (2.64587) |
|
hea (2.24949) |
|
fat (1.76913) |
|
mas (1.68244) |
|
mgm (1.44274) |
|
che (0.954198) |
|
ssp (0.948638) |
|
cst (0.840218) |
|
mgp (0.692042) |
|
clu (0.598229) |
|
med (0.58126) |
|
ste (0.540833) |
|
ldo (0.485013) |
|
isp (0.451128) |
|
nep (0.36785) |
|
ebs (0.354904) |
|
ton (0.351) |
|
duo (0.345602) |
|
eye (0.341006) |
|
cov (0.264306) |
|
cbr (0.255951) |
|
cly (0.241284) |
|
ece (0.229305) |
|
spc (0.226732) |
|
eje (0.197668) |
|
gul (0.177588) |
|
ill (0.175593) |
|
fbs (0.175346) |
|
cki (0.165235) |
|
csp (0.161186) |
|
ctl (0.153069) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
nca (0.136874) |
|
pla (0.133672) |
|
tra (0.123092) |
|
eru (0.120048) |
|
jca (0.11396) |
|
nbm (0.0993246) |
