Non-Coding RNA Search

Ss1.1-rche14_h20.5

Sequence:


               
               GATGGGGCTTGAGGTTGGGGTGGGAAGGATATTGTGGAAGCTGGTTTGACATTTATGGTT
CTGCTTCCTAGTTGTGGAGCTGGGTATTTCTATCCAGGCAGAGAGTATGAAGTGAATCAT
TCAACGTCTTTGTTTTCTCTTCACTTCTGTGTGCCCTCTCAATCCTACCTACACCAAACT
TTTCCCCTCTGTGCCTCTCACTTCTTCTTGCCATGTTTCCTTTTCTCACTCTCTTCTGCC
CTAGTTTCTTGGCCCTTCCTTCTTTGTCCCTCTCCCTCTATCACCCAGAGCGCGGTGATC
GTGATTTCAATGGCCTCCTCTCTTCACTCGTCCAGCTGCTTTCATCCCCTGAAGCCCGAA
CACTGCTTGGCTTCCAATCACTAGTGCAGCGAGAGTGGGTGGCGGCTGGACATCCCTTCC
TGACCCGACTTGGGGGAACTGGGGCCAGTGAAGAGGTGAGAACATTTGGGGAGAGTATAC
TAAAGAAGTAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGGGCTTGAGGTTGGGGTGGGAAGGATATTGTGGAAGCTGGTTTGACATTTATGGTT
CTGCTTCCTAGTTGTGGAGCTGGGTATTTCTATCCAGGCAGAGAGTATGAAGTGAATCAT
TCAACGTCTTTGTTTTCTCTTCACTTCTGTGTGCCCTCTCAATCCTACCTACACCAAACT
TTTCCCCTCTGTGCCTCTCACTTCTTCTTGCCATGTTTCCTTTTCTCACTCTCTTCTGCC
CTAGTTTCTTGGCCCTTCCTTCTTTGTCCCTCTCCCTCTATCACCCAGAGCGCGGTGATC
GTGATTTCAATGGCCTCCTCTCTTCACTCGTCCAGCTGCTTTCATCCCCTGAAGCCCGAA
CACTGCTTGGCTTCCAATCACTAGTGCAGCGAGAGTGGGTGGCGGCTGGACATCCCTTCC
TGACCCGACTTGGGGGAACTGGGGCCAGTGAAGAGGTGAGAACATTTGGGGAGAGTATAC
TAAAGAAGTAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61824222|ref|XP_582190.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61824222|ref|XP_582190.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               313-432, - strand, RNAz p=0.679169

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               313-432, - strand, RNAz p=0.679169

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-490, gnl|bosTau2|chr3 (17544197-17544686)
               

               
               1-490, gnl|Hg17|chr1 (146716680-146716178)
               

               
               1-490, gnl|Mm7|chr3 (96042299-96042766)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-490, gnl|bosTau2|chr3 (17544197-17544686)
               

               
               1-490, gnl|Hg17|chr1 (146716680-146716178)
               

               
               1-490, gnl|Mm7|chr3 (96042299-96042766)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               che (0.136314)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               che (0.136314)

	1-490, gnl\|bosTau2\|chr3 (17544197-17544686)
	1-490, gnl\|Hg17\|chr1 (146716680-146716178)
	1-490, gnl\|Mm7\|chr3 (96042299-96042766)