Non-Coding RNA Search

Ss1.1-rche14_i13.5

Sequence:


               
               CAGCCTGCCCGGGGCTCGGGGGGTGGGGGGAGCGGGGCGGGGAGATGGATAAACTGACCA
TCATCTCAGGATGTCTCTTTCTGGCCGCCGATATCTTCGCCATCGCCAGCATCGCCAACC
CGGACTGGATCAACACCGGGGAGTCCGCGGGAGCACTCACTGTGGGCCTTGTGCGACAGT
GTCAAACAATCCATGGACGAGACCGGACATGCATCCCACCTCGGCTTCCCCCAGAGTGGG
TCACCACACTGTTTTTTATCATCATGGGAATCATTTCATTAACTGTCACATGTGGTTTGC
TGGTGGCTTCCCACTGGCGAAGAGAAGCTACAAAATATGCTCGATGGATAGCATTCACTG
GAAGTAAGTAACCTGTGCTTACTAAATTTGTCTAGAAGGCACTCACACTGGTATATTTGT
GAAGATAATCAAGAATCAGTAATAAGGACTCTCTAATCATCAAAAAGCACCACTTCCGTA
CGGCCGTCAGATAGACTCTACGCGGTCCCACCAACTCTTCAGAATTCTCATCACGAGACC
AGGACATCCAAAACCTTAGTGGCTTTGTATGAAATTGTATTTAACGCATTTTATTTTTAC
TCACATTGCGACCTAAGTGTTCCAGGTCTGTGACTCAGACCTAACCACTAACCTGAGTCT
TTTCCTCTTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTGCCCGGGGCTCGGGGGGTGGGGGGAGCGGGGCGGGGAGATGGATAAACTGACCA
TCATCTCAGGATGTCTCTTTCTGGCCGCCGATATCTTCGCCATCGCCAGCATCGCCAACC
CGGACTGGATCAACACCGGGGAGTCCGCGGGAGCACTCACTGTGGGCCTTGTGCGACAGT
GTCAAACAATCCATGGACGAGACCGGACATGCATCCCACCTCGGCTTCCCCCAGAGTGGG
TCACCACACTGTTTTTTATCATCATGGGAATCATTTCATTAACTGTCACATGTGGTTTGC
TGGTGGCTTCCCACTGGCGAAGAGAAGCTACAAAATATGCTCGATGGATAGCATTCACTG
GAAGTAAGTAACCTGTGCTTACTAAATTTGTCTAGAAGGCACTCACACTGGTATATTTGT
GAAGATAATCAAGAATCAGTAATAAGGACTCTCTAATCATCAAAAAGCACCACTTCCGTA
CGGCCGTCAGATAGACTCTACGCGGTCCCACCAACTCTTCAGAATTCTCATCACGAGACC
AGGACATCCAAAACCTTAGTGGCTTTGTATGAAATTGTATTTAACGCATTTTATTTTTAC
TCACATTGCGACCTAAGTGTTCCAGGTCTGTGACTCAGACCTAACCACTAACCTGAGTCT
TTTCCTCTTCCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57087965|ref|XP_536941.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57087965|ref|XP_536941.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               223-342, + strand, RNAz p=0.570329

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-342, + strand, RNAz p=0.570329

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               144-670, gnl|bosTau2|chr25 (17829034-17828509)
               

               
               144-670, gnl|Hg17|chr16 (21994302-21994832)
               

               
               144-670, gnl|Mm7|chr7 (116648396-116648906)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-670, gnl|bosTau2|chr25 (17829034-17828509)
               

               
               144-670, gnl|Hg17|chr16 (21994302-21994832)
               

               
               144-670, gnl|Mm7|chr7 (116648396-116648906)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tbr (0.154178)
               

               
               che (0.136314)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               che (0.136314)

	144-670, gnl\|bosTau2\|chr25 (17829034-17828509)
	144-670, gnl\|Hg17\|chr16 (21994302-21994832)
	144-670, gnl\|Mm7\|chr7 (116648396-116648906)