Non-Coding RNA Search

Ss1.1-rche14_k13.5

Sequence:


               
               TGCAAACTCTACTCTATGGTTCTGGGTTTGGGCAGGATTTTCTCCCAGGATACCACAGGG
CAACTGTCAAGCTGCTTACCCCCTCCCCCTAGGGCTGGGTGCGGTGCCCAGCCTTCTGAT
TTGTGCCTCTGTTGTGTTTGGGGATGGGGGTCCTTTCCTGTTCTGGGCTCCTTGAGAGTT
CAGAGTACCCAGTACAGGTCAGCTTTAAGGTACAGCTTTCAGTGTTTTTTGTTGTTCGTT
TTTCTGGGGTCTTTGGACCCTCTGCTTTCTGATTTCTCTTGCCTCCTCATTGAGGGAGCA
TCTTGCAGTTGTTTGTATCTGGTTGTTGGGCCAGCCCCAGGCCTCCTTTAGATCTGGAAC
CAGGCCAAGCCAGAGCCATAGGTGGGTGGGGTGGCACTGAGTTGTTCAGGAGTTCAGATC
TAGCCAGTGGATTCTTGCTGGGCTTTGGGCTGGCGGGGCAGCGTCCTGGACCTCACTCCT
GGGCCTGAATGAGACCCTTCTTAAATGTTTTTACAAGTTTGTGTTTTATTTATGGAGTGA
CTTATCCCTTCCATTTAGAGCAGCCCCACCCAGCCGTCTCTGGACTTCTGCCTCCTAAAA
GCAGAGCTGCCTGATTGGCCTCCACCCTGTATTGGGAGCCCAGCCACCATGCTCACGGGT
ATTTTTCCTCAGAATTTATAAGCAGTTATTTATATGAACCCTTGTTATGTCAACTGGTTT
GTATTGCCTATTTTGATTACAAAATAAAAATTTAACAAAGTCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAAACTCTACTCTATGGTTCTGGGTTTGGGCAGGATTTTCTCCCAGGATACCACAGGG
CAACTGTCAAGCTGCTTACCCCCTCCCCCTAGGGCTGGGTGCGGTGCCCAGCCTTCTGAT
TTGTGCCTCTGTTGTGTTTGGGGATGGGGGTCCTTTCCTGTTCTGGGCTCCTTGAGAGTT
CAGAGTACCCAGTACAGGTCAGCTTTAAGGTACAGCTTTCAGTGTTTTTTGTTGTTCGTT
TTTCTGGGGTCTTTGGACCCTCTGCTTTCTGATTTCTCTTGCCTCCTCATTGAGGGAGCA
TCTTGCAGTTGTTTGTATCTGGTTGTTGGGCCAGCCCCAGGCCTCCTTTAGATCTGGAAC
CAGGCCAAGCCAGAGCCATAGGTGGGTGGGGTGGCACTGAGTTGTTCAGGAGTTCAGATC
TAGCCAGTGGATTCTTGCTGGGCTTTGGGCTGGCGGGGCAGCGTCCTGGACCTCACTCCT
GGGCCTGAATGAGACCCTTCTTAAATGTTTTTACAAGTTTGTGTTTTATTTATGGAGTGA
CTTATCCCTTCCATTTAGAGCAGCCCCACCCAGCCGTCTCTGGACTTCTGCCTCCTAAAA
GCAGAGCTGCCTGATTGGCCTCCACCCTGTATTGGGAGCCCAGCCACCATGCTCACGGGT
ATTTTTCCTCAGAATTTATAAGCAGTTATTTATATGAACCCTTGTTATGTCAACTGGTTT
GTATTGCCTATTTTGATTACAAAATAAAAATTTAACAAAGTCAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               111-218, + strand, RNAz p=0.900232

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               111-218, + strand, RNAz p=0.900232

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AL133609, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL133609, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               49-757, gnl|bosTau2|chr2 (78139573-78140279)
               

               
               49-757, gnl|Hg17|chr1 (26288731-26289438)
               

               
               49-757, gnl|Mm7|chr4 (133508982-133508295)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-757, gnl|bosTau2|chr2 (78139573-78140279)
               

               
               49-757, gnl|Hg17|chr1 (26288731-26289438)
               

               
               49-757, gnl|Mm7|chr4 (133508982-133508295)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               eye (0.341006)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               med (0.116252)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               cag (0.151194)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               med (0.116252)

	49-757, gnl\|bosTau2\|chr2 (78139573-78140279)
	49-757, gnl\|Hg17\|chr1 (26288731-26289438)
	49-757, gnl\|Mm7\|chr4 (133508982-133508295)

	eye (0.341006)
	hea (0.204499)
	fcc (0.197785)
	cag (0.151194)
	hlv (0.139256)
	che (0.136314)
	pla (0.133672)
	med (0.116252)