Ss1.1-rche15_i2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAATTACGTAACCTGAAGCGGGAGGAAGGAGGAGGCTACCGCTGCGTGGCATCTGCACCC AGTGTACCTGGCCTGAACCGTACCCAGCTGGTCAACGTGGCCATTTTTGGGTCCCCATGG ATGACATTGAGGGAGAGGAAGATACGGGTGAAGGAGAACACGATGCTGAACCTGTCCTGT GAAGCCTCAGGGCATCCCCGGCCCAGCATCATCTGGAACGTTGATGGCACGGCCAGTGAG CAGGACCAAGATCCGCAGACTGTCCTGAGCATCCTGAGTGTCCTCGTGACCCCAGAACTG CTGGAGACCGGTGCCAAGTGCGTGGCCTCCAACCCGCTGGGCGAAAACGTCACCAGCATC ATCCTGGAGCTGGACTCCAACAGGACCAATAGCCTCAGCACCTCCACCTTCAGCCCTCCT GCCAGAGCCAACAGCACCTCCACAGAGAGAAAGCTGCCGGAGCCTGAGAGCAAGGGCGTG GTCATCGTGGCCGTGACCGTGTGTGTCCTGGTCCTGGCCGTGCTGGGTGCTGTTCTCTAT TTCTTCTACAAGAAGGGCAAGCTGCCGTGTGGACGGTCAGGCAAACAAGAGATCACGCTG CCCCCGTCTCGTAAGAGCGAATTTGTAGTTGAAGTTAAGTCAGATAAGCTCCCAGAAGAG ATGGGCCTCCTTCAGGGCAGCAACGGTGACAAGAGGGCTCCAGGAGACCAGGGAGAGAAA TACATCGATCTGAGGCACTAGCCTGGCGACTCACAAGGCGCTCCCTCCCCGGCCTGGAAC ATTTCCTGTTCCCTGCTCACCCTGCCCCTACCCCAGCACTCAGGATGGTCGCCAAAGTCT CTGAAGTGGACCAGAGAAGAACCCCCTTCCAGCTGCCCCGCAGGCCGTTTCAGAGGGCAC ACAGGCTGGGACCCAAGCCATCCCAAGAAGGACCTCACATGGCCCTGGAGGCCCTCTCTT CAGGGACCTGTCCACCACTACTGTCTCAATCTGTTGAGTGACACTCATGCCAAGGAGGGG GCCTCAGTATTCCAGAAGTTTCTTGCAGAACATGTTTTCTCTTTACACGTATTGTGGTTG TAAATACCTGTTTTCTACCAGCAGCCAAATTAGGTAGCCTATTTATCATGAGCTGATTTC CCACTCCAGGGCTGGCTTCGTAGTTCAGTTCTATCACTGAAGTGAGTGAGGATGCTGCGA GCCCAGGCCTCTCTCTGCTGGTGAAGCACGTTGCTCAAACTGGTTCTAGAGACCCCAGCA GTATCTAGGAGCAGCCCCCTGCCTGCCTTTGGAGTCGCTTTTGCAACACTCCTCTCCCTA GCAGGAGCCAGGACCTGGAGGTGTTTCTTAAAAGATATGCTAGGTATATCTCACTGTCCC TGCAGTGAGGAAGCTGGGTGCCACTTTCCAGAGTTAAGGCCATTGAGCCCAAGCCCCCAC GCCTTCTTGAGGAATCAACCTAAGACTGAATGCTAGGAGTTTGGGATGGAAATAAGGTCC AGAGTGTCCTTTATGAGGACTGAGGCTATAGAGTTATACCAGCACCAGACTTCTACAGAC TGAGCTAATGGGTCTAGACCTTAGCAGAAGAGAAGGACCCTAATGGGAGAATGGTACTGA GAGATGAGAAATGGGCCTGGCTAGAGCTTTGGGGGTGTGTGTATGTGTCTCTGTGTGTGT ATGTGTATGTGTGTGTGTGTGTATATATATATGGTTTTGTTAGGGTGTAAATTTGCAAAT TCTTTCCTTTTTATATATGTGTATATATATATATATATATATATATATGAAAAATAAAGC TTAACTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAATTACGTAACCTGAAGCGGGAGGAAGGAGGAGGCTACCGCTGCGTGGCATCTGCACCC AGTGTACCTGGCCTGAACCGTACCCAGCTGGTCAACGTGGCCATTTTTGGGTCCCCATGG ATGACATTGAGGGAGAGGAAGATACGGGTGAAGGAGAACACGATGCTGAACCTGTCCTGT GAAGCCTCAGGGCATCCCCGGCCCAGCATCATCTGGAACGTTGATGGCACGGCCAGTGAG CAGGACCAAGATCCGCAGACTGTCCTGAGCATCCTGAGTGTCCTCGTGACCCCAGAACTG CTGGAGACCGGTGCCAAGTGCGTGGCCTCCAACCCGCTGGGCGAAAACGTCACCAGCATC ATCCTGGAGCTGGACTCCAACAGGACCAATAGCCTCAGCACCTCCACCTTCAGCCCTCCT GCCAGAGCCAACAGCACCTCCACAGAGAGAAAGCTGCCGGAGCCTGAGAGCAAGGGCGTG GTCATCGTGGCCGTGACCGTGTGTGTCCTGGTCCTGGCCGTGCTGGGTGCTGTTCTCTAT TTCTTCTACAAGAAGGGCAAGCTGCCGTGTGGACGGTCAGGCAAACAAGAGATCACGCTG CCCCCGTCTCGTAAGAGCGAATTTGTAGTTGAAGTTAAGTCAGATAAGCTCCCAGAAGAG ATGGGCCTCCTTCAGGGCAGCAACGGTGACAAGAGGGCTCCAGGAGACCAGGGAGAGAAA TACATCGATCTGAGGCACTAGCCTGGCGACTCACAAGGCGCTCCCTCCCCGGCCTGGAAC ATTTCCTGTTCCCTGCTCACCCTGCCCCTACCCCAGCACTCAGGATGGTCGCCAAAGTCT CTGAAGTGGACCAGAGAAGAACCCCCTTCCAGCTGCCCCGCAGGCCGTTTCAGAGGGCAC ACAGGCTGGGACCCAAGCCATCCCAAGAAGGACCTCACATGGCCCTGGAGGCCCTCTCTT CAGGGACCTGTCCACCACTACTGTCTCAATCTGTTGAGTGACACTCATGCCAAGGAGGGG GCCTCAGTATTCCAGAAGTTTCTTGCAGAACATGTTTTCTCTTTACACGTATTGTGGTTG TAAATACCTGTTTTCTACCAGCAGCCAAATTAGGTAGCCTATTTATCATGAGCTGATTTC CCACTCCAGGGCTGGCTTCGTAGTTCAGTTCTATCACTGAAGTGAGTGAGGATGCTGCGA GCCCAGGCCTCTCTCTGCTGGTGAAGCACGTTGCTCAAACTGGTTCTAGAGACCCCAGCA GTATCTAGGAGCAGCCCCCTGCCTGCCTTTGGAGTCGCTTTTGCAACACTCCTCTCCCTA GCAGGAGCCAGGACCTGGAGGTGTTTCTTAAAAGATATGCTAGGTATATCTCACTGTCCC TGCAGTGAGGAAGCTGGGTGCCACTTTCCAGAGTTAAGGCCATTGAGCCCAAGCCCCCAC GCCTTCTTGAGGAATCAACCTAAGACTGAATGCTAGGAGTTTGGGATGGAAATAAGGTCC AGAGTGTCCTTTATGAGGACTGAGGCTATAGAGTTATACCAGCACCAGACTTCTACAGAC TGAGCTAATGGGTCTAGACCTTAGCAGAAGAGAAGGACCCTAATGGGAGAATGGTACTGA GAGATGAGAAATGGGCCTGGCTAGAGCTTTGGGGGTGTGTGTATGTGTCTCTGTGTGTGT ATGTGTATGTGTGTGTGTGTGTATATATATATGGTTTTGTTAGGGTGTAAATTTGCAAAT TCTTTCCTTTTTATATATGTGTATATATATATATATATATATATATATGAAAAATAAAGC TTAACTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 901-1047, - strand, RNAz p=0.990516 | |
| 1088-1205, - strand, RNAz p=0.862067 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 901-1047, - strand, RNAz p=0.990516 | |
| 1088-1205, - strand, RNAz p=0.862067 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 1-110, gnl|bosTau2|chr15 (14394341-14394232) | |
| 1-110, gnl|canFam2|chr5 (17602637-17602090) | |
| 1-110, gnl|echTel1|scaffold_268598 (7504-6949) | |
| 1-110, gnl|hg17|chr11 (118687622-118688180) | |
| 1-110, gnl|Hg17|chr11 (118687836-118687727) | |
| 1-110, gnl|loxAfr1|scaffold_24613 (24861-24206) | |
| 1-110, gnl|mm7|chr9 (44074439-44073915) | |
| 1-110, gnl|Mm7|chr9 (44074238-44074347) | |
| 1-110, gnl|monDom2|scaffold_2 (119240789-119240171) | |
| 1-110, gnl|panTro1|chr9_random (4752527-4751964) | |
| 1-110, gnl|rheMac2|chr14 (117725039-117725596) | |
| 1-110, gnl|rn3|chr8 (47134044-47133503) | |
| 231-373, gnl|bosTau2|chr15 (14393867-14393725) | |
| 231-373, gnl|Hg17|chr11 (118687342-118687200) | |
| 231-373, gnl|Mm7|chr9 (44074706-44074848) | |
| 442-593, gnl|bosTau2|chr15 (14393399-14393248) | |
| 442-593, gnl|canFam2|chr5 (17603535-17603382) | |
| 442-593, gnl|danRer3|chr5 (65276931-65276800) | |
| 442-593, gnl|dasNov1|scaffold_190870 (884-733) | |
| 442-593, gnl|echTel1|scaffold_268598 (8376-8214) | |
| 442-593, gnl|fr1|chrUn (7826385-7826530) | |
| 442-593, gnl|galGal2|chr24 (4101812-4101627) | |
| 442-593, gnl|hg17|chr11 (118686649-118686807) | |
| 442-593, gnl|Hg17|chr11 (118686827-118686676) | |
| 442-593, gnl|loxAfr1|scaffold_24613 (25852-25683) | |
| 442-593, gnl|mm7|chr9 (44075370-44075208) | |
| 442-593, gnl|Mm7|chr9 (44075186-44075337) | |
| 442-593, gnl|monDom2|scaffold_2 (119241900-119241752) | |
| 442-593, gnl|oryCun1|scaffold_168049 (512-364) | |
| 442-593, gnl|panTro1|chr9_random (4753500-4753342) | |
| 442-593, gnl|rheMac2|chr14 (117723618-117723776) | |
| 442-593, gnl|rn3|chr8 (47134977-47134818) | |
| 442-593, gnl|tetNig1|chr16 (541184-541026) | |
| 710-1555, gnl|bosTau2|chr15 (14392345-14391499) | |
| 710-1555, gnl|Hg17|chr11 (118685837-118684654) | |
| 1600-1811, gnl|bosTau2|chr15 (14391501-14391300) | |
| 1600-1811, gnl|canFam2|chr5 (17605360-17605221) | |
| 1600-1811, gnl|echTel1|scaffold_268598 (10195-10093) | |
| 1600-1811, gnl|hg17|chr11 (118684438-118684582) | |
| 1600-1811, gnl|Hg17|chr11 (118684656-118684454) | |
| 1600-1811, gnl|loxAfr1|scaffold_24613 (27890-27776) | |
| 1600-1811, gnl|mm7|chr9 (44077083-44076974) | |
| 1600-1811, gnl|Mm7|chr9 (44076847-44077065) | |
| 1600-1811, gnl|monDom2|scaffold_2 (119244150-119244035) | |
| 1600-1811, gnl|oryCun1|scaffold_168049 (2216-2088) | |
| 1600-1811, gnl|panTro1|chr9_random (4755694-4755568) | |
| 1600-1811, gnl|rheMac2|chr14 (117721421-117721539) | |
| 1600-1811, gnl|rn3|chr8 (47136716-47136606) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-110, gnl|bosTau2|chr15 (14394341-14394232) | |
| 1-110, gnl|canFam2|chr5 (17602637-17602090) | |
| 1-110, gnl|echTel1|scaffold_268598 (7504-6949) | |
| 1-110, gnl|hg17|chr11 (118687622-118688180) | |
| 1-110, gnl|Hg17|chr11 (118687836-118687727) | |
| 1-110, gnl|loxAfr1|scaffold_24613 (24861-24206) | |
| 1-110, gnl|mm7|chr9 (44074439-44073915) | |
| 1-110, gnl|Mm7|chr9 (44074238-44074347) | |
| 1-110, gnl|monDom2|scaffold_2 (119240789-119240171) | |
| 1-110, gnl|panTro1|chr9_random (4752527-4751964) | |
| 1-110, gnl|rheMac2|chr14 (117725039-117725596) | |
| 1-110, gnl|rn3|chr8 (47134044-47133503) | |
| 231-373, gnl|bosTau2|chr15 (14393867-14393725) | |
| 231-373, gnl|Hg17|chr11 (118687342-118687200) | |
| 231-373, gnl|Mm7|chr9 (44074706-44074848) | |
| 442-593, gnl|bosTau2|chr15 (14393399-14393248) | |
| 442-593, gnl|canFam2|chr5 (17603535-17603382) | |
| 442-593, gnl|danRer3|chr5 (65276931-65276800) | |
| 442-593, gnl|dasNov1|scaffold_190870 (884-733) | |
| 442-593, gnl|echTel1|scaffold_268598 (8376-8214) | |
| 442-593, gnl|fr1|chrUn (7826385-7826530) | |
| 442-593, gnl|galGal2|chr24 (4101812-4101627) | |
| 442-593, gnl|hg17|chr11 (118686649-118686807) | |
| 442-593, gnl|Hg17|chr11 (118686827-118686676) | |
| 442-593, gnl|loxAfr1|scaffold_24613 (25852-25683) | |
| 442-593, gnl|mm7|chr9 (44075370-44075208) | |
| 442-593, gnl|Mm7|chr9 (44075186-44075337) | |
| 442-593, gnl|monDom2|scaffold_2 (119241900-119241752) | |
| 442-593, gnl|oryCun1|scaffold_168049 (512-364) | |
| 442-593, gnl|panTro1|chr9_random (4753500-4753342) | |
| 442-593, gnl|rheMac2|chr14 (117723618-117723776) | |
| 442-593, gnl|rn3|chr8 (47134977-47134818) | |
| 442-593, gnl|tetNig1|chr16 (541184-541026) | |
| 710-1555, gnl|bosTau2|chr15 (14392345-14391499) | |
| 710-1555, gnl|Hg17|chr11 (118685837-118684654) | |
| 1600-1811, gnl|bosTau2|chr15 (14391501-14391300) | |
| 1600-1811, gnl|canFam2|chr5 (17605360-17605221) | |
| 1600-1811, gnl|echTel1|scaffold_268598 (10195-10093) | |
| 1600-1811, gnl|hg17|chr11 (118684438-118684582) | |
| 1600-1811, gnl|Hg17|chr11 (118684656-118684454) | |
| 1600-1811, gnl|loxAfr1|scaffold_24613 (27890-27776) | |
| 1600-1811, gnl|mm7|chr9 (44077083-44076974) | |
| 1600-1811, gnl|Mm7|chr9 (44076847-44077065) | |
| 1600-1811, gnl|monDom2|scaffold_2 (119244150-119244035) | |
| 1600-1811, gnl|oryCun1|scaffold_168049 (2216-2088) | |
| 1600-1811, gnl|panTro1|chr9_random (4755694-4755568) | |
| 1600-1811, gnl|rheMac2|chr14 (117721421-117721539) | |
| 1600-1811, gnl|rn3|chr8 (47136716-47136606) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| aor (1.95274) | |
| pla (0.401016) | |
| fbs (0.350693) | |
| hea (0.204499) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| pty (0.142714) | |
| cst (0.140036) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cov (0.132153) | |
| bla (0.124347) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (1.95274) | |
| pla (0.401016) | |
| fbs (0.350693) | |
| hea (0.204499) | |
| sto (0.179824) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| pty (0.142714) | |
| cst (0.140036) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| cov (0.132153) | |
| bla (0.124347) | |
| eru (0.120048) | |
| jca (0.11396) |