Non-Coding RNA Search

Ss1.1-rche15_i6.5

Sequence:


               
               GGGTTAGCCACACAACTGTACAGAGAATTAATATGTGTTCCATATATGGCCAAGTTTGTT
GTTTTTGCCAAAATGAATGATCCTGTAGAATCCTCACTGCGGTGCTTCTGTATGACCGAT
GATAAAGTGGACAAAACTTTAGAGCAGCAAGAGAACTTCGAGGAAGTTGCAAGAAGCAAA
GATATTGAGGTCCTGGAAGGAAAACCTATTTATGTTGATTGTTATGGAAACCTGGCTCCA
CTCACCAAAGGAGGACAGCAACTTGTTTTTAATTTTTATGCTTTCAAAGAGAACAGACTG
CCCTTTTCCATCAAGATTAGAGACACCAGCCAAGAGCCCTGTGGTCGTCTATCTTTCCTG
AAAGAACCAAAGACGACGAAAGGCCTGCCTCAAACAGCTGTCTGCAACTTAAACATCACT
CTGCCAGCACACAAGAAGATGGAGAAAACAGAACGACGACAGACCTTTGCATCATTAGCC
TTACGTCCACAGAGTCCATGTGAACGGACAGATATCAGGATGGCAATAGTAGCTGATCAC
CTGGGACTTAGTTGGACAGAACTGGCAAGGGAACTGAATTTTTCAGTGGATGAAATCAAT
CAAATACGTGTGGAAAATCCAAATTCTTTAATTTCTCAAAGCTTCATGTTACTAAAAAAA
TGGGTCACCAGAGACGGAAAAAATGCTACAACTGATGCCTTAACTTCGGTCTTGACAAAA
ATTAATCGAATAGATATAGTGACTCTGCTAGAAGGACCAATATTTGATTATGGAAATATT
TCAGGCACCAGAAGTTTTGCAGATGAGAACAGTGTTTTCCATGACCCAGTTGATGGTCAT
CCTTCCCTTCAAGTGGAACTGGAAACTCCCACAGGGTTGCACTACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTAGCCACACAACTGTACAGAGAATTAATATGTGTTCCATATATGGCCAAGTTTGTT
GTTTTTGCCAAAATGAATGATCCTGTAGAATCCTCACTGCGGTGCTTCTGTATGACCGAT
GATAAAGTGGACAAAACTTTAGAGCAGCAAGAGAACTTCGAGGAAGTTGCAAGAAGCAAA
GATATTGAGGTCCTGGAAGGAAAACCTATTTATGTTGATTGTTATGGAAACCTGGCTCCA
CTCACCAAAGGAGGACAGCAACTTGTTTTTAATTTTTATGCTTTCAAAGAGAACAGACTG
CCCTTTTCCATCAAGATTAGAGACACCAGCCAAGAGCCCTGTGGTCGTCTATCTTTCCTG
AAAGAACCAAAGACGACGAAAGGCCTGCCTCAAACAGCTGTCTGCAACTTAAACATCACT
CTGCCAGCACACAAGAAGATGGAGAAAACAGAACGACGACAGACCTTTGCATCATTAGCC
TTACGTCCACAGAGTCCATGTGAACGGACAGATATCAGGATGGCAATAGTAGCTGATCAC
CTGGGACTTAGTTGGACAGAACTGGCAAGGGAACTGAATTTTTCAGTGGATGAAATCAAT
CAAATACGTGTGGAAAATCCAAATTCTTTAATTTCTCAAAGCTTCATGTTACTAAAAAAA
TGGGTCACCAGAGACGGAAAAAATGCTACAACTGATGCCTTAACTTCGGTCTTGACAAAA
ATTAATCGAATAGATATAGTGACTCTGCTAGAAGGACCAATATTTGATTATGGAAATATT
TCAGGCACCAGAAGTTTTGCAGATGAGAACAGTGTTTTCCATGACCCAGTTGATGGTCAT
CCTTCCCTTCAAGTGGAACTGGAAACTCCCACAGGGTTGCACTACCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-191, + strand, RNAz p=0.944849

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-191, + strand, RNAz p=0.944849

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK126851, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK126851, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               1-191, gnl|bosTau2|chr28 (12002009-12002199)
               

               
               1-191, gnl|canFam2|chr4 (15420489-15420758)
               

               
               1-191, gnl|danRer3|chr17 (21841896-21842146)
               

               
               1-191, gnl|dasNov1|scaffold_19383 (49734-50005)
               

               
               1-191, gnl|echTel1|scaffold_311574 (66126-66386)
               

               
               1-191, gnl|fr1|chrUn (135942055-135941782)
               

               
               1-191, gnl|galGal2|chr6 (8401883-8401621)
               

               
               1-191, gnl|hg17|chr10 (61514353-61514618)
               

               
               1-191, gnl|Hg17|chr10 (61514554-61514364)
               

               
               1-191, gnl|loxAfr1|scaffold_1140 (184673-184937)
               

               
               1-191, gnl|mm7|chr10 (69580924-69580649)
               

               
               1-191, gnl|Mm7|chr10 (69580720-69580910)
               

               
               1-191, gnl|monDom2|scaffold_67 (179645-179912)
               

               
               1-191, gnl|oryCun1|scaffold_198519 (12815-13089)
               

               
               1-191, gnl|panTro1|chr8 (62330711-62330977)
               

               
               1-191, gnl|rheMac2|chr9 (77202534-77202269)
               

               
               1-191, gnl|rn3|chr20 (19406406-19406684)
               

               
               1-191, gnl|tetNig1|chrUn_random (9936022-9936279)
               

               
               1-191, gnl|xenTro1|scaffold_445 (370154-370412)
               


               
               556-705, gnl|bosTau2|chr28 (12022326-12022474)
               

               
               556-705, gnl|Hg17|chr10 (61494056-61493908)
               

               
               556-705, gnl|Mm7|chr10 (69600301-69600450)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-191, gnl|bosTau2|chr28 (12002009-12002199)
               

               
               1-191, gnl|canFam2|chr4 (15420489-15420758)
               

               
               1-191, gnl|danRer3|chr17 (21841896-21842146)
               

               
               1-191, gnl|dasNov1|scaffold_19383 (49734-50005)
               

               
               1-191, gnl|echTel1|scaffold_311574 (66126-66386)
               

               
               1-191, gnl|fr1|chrUn (135942055-135941782)
               

               
               1-191, gnl|galGal2|chr6 (8401883-8401621)
               

               
               1-191, gnl|hg17|chr10 (61514353-61514618)
               

               
               1-191, gnl|Hg17|chr10 (61514554-61514364)
               

               
               1-191, gnl|loxAfr1|scaffold_1140 (184673-184937)
               

               
               1-191, gnl|mm7|chr10 (69580924-69580649)
               

               
               1-191, gnl|Mm7|chr10 (69580720-69580910)
               

               
               1-191, gnl|monDom2|scaffold_67 (179645-179912)
               

               
               1-191, gnl|oryCun1|scaffold_198519 (12815-13089)
               

               
               1-191, gnl|panTro1|chr8 (62330711-62330977)
               

               
               1-191, gnl|rheMac2|chr9 (77202534-77202269)
               

               
               1-191, gnl|rn3|chr20 (19406406-19406684)
               

               
               1-191, gnl|tetNig1|chrUn_random (9936022-9936279)
               

               
               1-191, gnl|xenTro1|scaffold_445 (370154-370412)
               


               
               556-705, gnl|bosTau2|chr28 (12022326-12022474)
               

               
               556-705, gnl|Hg17|chr10 (61494056-61493908)
               

               
               556-705, gnl|Mm7|chr10 (69600301-69600450)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               che (0.136314)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               che (0.136314)

	1-191, gnl\|bosTau2\|chr28 (12002009-12002199)
	1-191, gnl\|canFam2\|chr4 (15420489-15420758)
	1-191, gnl\|danRer3\|chr17 (21841896-21842146)
	1-191, gnl\|dasNov1\|scaffold_19383 (49734-50005)
	1-191, gnl\|echTel1\|scaffold_311574 (66126-66386)
	1-191, gnl\|fr1\|chrUn (135942055-135941782)
	1-191, gnl\|galGal2\|chr6 (8401883-8401621)
	1-191, gnl\|hg17\|chr10 (61514353-61514618)
	1-191, gnl\|Hg17\|chr10 (61514554-61514364)
	1-191, gnl\|loxAfr1\|scaffold_1140 (184673-184937)
	1-191, gnl\|mm7\|chr10 (69580924-69580649)
	1-191, gnl\|Mm7\|chr10 (69580720-69580910)
	1-191, gnl\|monDom2\|scaffold_67 (179645-179912)
	1-191, gnl\|oryCun1\|scaffold_198519 (12815-13089)
	1-191, gnl\|panTro1\|chr8 (62330711-62330977)
	1-191, gnl\|rheMac2\|chr9 (77202534-77202269)
	1-191, gnl\|rn3\|chr20 (19406406-19406684)
	1-191, gnl\|tetNig1\|chrUn_random (9936022-9936279)
	1-191, gnl\|xenTro1\|scaffold_445 (370154-370412)

	556-705, gnl\|bosTau2\|chr28 (12022326-12022474)
	556-705, gnl\|Hg17\|chr10 (61494056-61493908)
	556-705, gnl\|Mm7\|chr10 (69600301-69600450)