Non-Coding RNA Search

Ss1.1-rche15_n19.5

Sequence:


               
               AGGGAGGAAAGCCAGGAGGCACAGGTACCTGCCCTGCTTCCTCCATTTCCTCCTACCAAC
TCCTGAGGAGCTTCAGTTGTAGGTCAATGCCAAGGACCCAACTCCAGCATCCTCTGGAGA
CCTCTCCGTTAGAATGCAAAGGACTGTACTCTAATCGCCAATGGGAGATAGCATGGAGTC
AGATGAAATGCCTAACTCACACTAAAAAGGAAATATTCCTGGCCAACATCTCTTCCAAAG
GGAAGTTGCGTGCTCTAGGTAACCTGAGAACTTCTTTGCAAGAAAATCAGCCTCTCCAAG
TAGGTATATTAAAACACTGAAGAGCAAGAAGGGCTAGGACGCTCTGGTCTCCTCCAGTCT
CCAGAAGTGGCTGGTCATGAGGCTCCTCAGCCCCTCAAATAAGGTATTTGTTATAGAACT
CGCCTGGTAGTTCAGGTGCCCCGTCTCCAGACTTTTGCAGGATATATTTCCTTACAATGA
AAAATCATCAACAGTATGAAAATATTACTAATTCAAGCCACTTAAAAATGACATGTCCAC
CTAGCCGATCAGTCCCCTTCACAGAAAGACTGTTATTGCAAAGGCTCAAGATGAAGCTTT
TCCCCTGCAGTTTAGTGGCTACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGAGGAAAGCCAGGAGGCACAGGTACCTGCCCTGCTTCCTCCATTTCCTCCTACCAAC
TCCTGAGGAGCTTCAGTTGTAGGTCAATGCCAAGGACCCAACTCCAGCATCCTCTGGAGA
CCTCTCCGTTAGAATGCAAAGGACTGTACTCTAATCGCCAATGGGAGATAGCATGGAGTC
AGATGAAATGCCTAACTCACACTAAAAAGGAAATATTCCTGGCCAACATCTCTTCCAAAG
GGAAGTTGCGTGCTCTAGGTAACCTGAGAACTTCTTTGCAAGAAAATCAGCCTCTCCAAG
TAGGTATATTAAAACACTGAAGAGCAAGAAGGGCTAGGACGCTCTGGTCTCCTCCAGTCT
CCAGAAGTGGCTGGTCATGAGGCTCCTCAGCCCCTCAAATAAGGTATTTGTTATAGAACT
CGCCTGGTAGTTCAGGTGCCCCGTCTCCAGACTTTTGCAGGATATATTTCCTTACAATGA
AAAATCATCAACAGTATGAAAATATTACTAATTCAAGCCACTTAAAAATGACATGTCCAC
CTAGCCGATCAGTCCCCTTCACAGAAAGACTGTTATTGCAAAGGCTCAAGATGAAGCTTT
TCCCCTGCAGTTTAGTGGCTACTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.942363

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.942363

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-624, gnl|bosTau2|chr5 (28284159-28284783)
               

               
               1-624, gnl|Hg17|chr12 (68290111-68289471)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-624, gnl|bosTau2|chr5 (28284159-28284783)
               

               
               1-624, gnl|Hg17|chr12 (68290111-68289471)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               che (0.408942)
               

               
               cst (0.280073)
               

               
               hea (0.204499)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.408942)
               

               
               cst (0.280073)
               

               
               hea (0.204499)

	1-624, gnl\|bosTau2\|chr5 (28284159-28284783)
	1-624, gnl\|Hg17\|chr12 (68290111-68289471)