Non-Coding RNA Search

Ss1.1-rche18_h14.5

Sequence:


               
               GAGCCGGCCTCGGAAGGAGCAGCCGCCGTGGCTGTTGCGGGGAGAGAGTGAGAGTTCCAA
CTTTTCCACTGGCCTGAGAGGTTTGGGGAACCGAGGGTCGCGATGTCAGAGAAAAAACAG
CCGGTAGACTTGGGTCTCCTGGAGGAGGACGACGAGTTCGAGGAGTTTCCTGCAGAAGAC
TGGGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATTGGGATGATGAC
AATGTAGAGGATGACTTCTCCAATCAGTTACGAGCTGAATTAGAGAAACATGGTTATAAG
ATGGAGACCTCATAGCATCCAGAAGAAATGTTGAAGCAACCTAAATTTGAACTGTTTACT
AAATTCTGGAACAGAGAACCCAGGGGGGACACTTAAAAAAATGTTTATTTCATTACCTGC
TTGGACTTATTTTTGTTTTTGTAACACAAAAAATAAATGTTTGATCTAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCGGCCTCGGAAGGAGCAGCCGCCGTGGCTGTTGCGGGGAGAGAGTGAGAGTTCCAA
CTTTTCCACTGGCCTGAGAGGTTTGGGGAACCGAGGGTCGCGATGTCAGAGAAAAAACAG
CCGGTAGACTTGGGTCTCCTGGAGGAGGACGACGAGTTCGAGGAGTTTCCTGCAGAAGAC
TGGGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATTGGGATGATGAC
AATGTAGAGGATGACTTCTCCAATCAGTTACGAGCTGAATTAGAGAAACATGGTTATAAG
ATGGAGACCTCATAGCATCCAGAAGAAATGTTGAAGCAACCTAAATTTGAACTGTTTACT
AAATTCTGGAACAGAGAACCCAGGGGGGACACTTAAAAAAATGTTTATTTCATTACCTGC
TTGGACTTATTTTTGTTTTTGTAACACAAAAAATAAATGTTTGATCTAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IBB7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IBB7_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               227-321, + strand, RNAz p=0.93456

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               227-321, + strand, RNAz p=0.93456

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               28-492, gnl|bosTau2|chr22 (16579540-16580004)
               

               
               28-492, gnl|Hg17|chr5 (81224025-81224483)
               


               
               213-480, gnl|bosTau2|chr21 (37174858-37174595)
               

               
               213-480, gnl|Hg17|chr5 (81224176-81224470)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-492, gnl|bosTau2|chr22 (16579540-16580004)
               

               
               28-492, gnl|Hg17|chr5 (81224025-81224483)
               


               
               213-480, gnl|bosTau2|chr21 (37174858-37174595)
               

               
               213-480, gnl|Hg17|chr5 (81224176-81224470)

Expressed library(ies): 57 entry(ies)

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Expressed library(ies): 57 entry(ies)

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               che (4.49836)
               

               
               cte (3.80562)
               

               
               sto (2.69736)
               

               
               cki (2.64375)
               

               
               cje (2.47852)
               

               
               cmu (2.05033)
               

               
               sme (1.83262)
               

               
               aor (1.56219)
               

               
               csk (1.40746)
               

               
               cst (1.26033)
               

               
               cut (1.18946)
               

               
               vin (0.997672)
               

               
               bfe (0.899146)
               

               
               spc (0.680195)
               

               
               nlu (0.575043)
               

               
               sag (0.548145)
               

               
               fce (0.543183)
               

               
               rec (0.519211)
               

               
               cbe (0.478469)
               

               
               lnt (0.426925)
               

               
               mas (0.42061)
               

               
               ssp (0.406559)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               nmm (0.265604)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 57 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (4.49836)
               

               
               cte (3.80562)
               

               
               sto (2.69736)
               

               
               cki (2.64375)
               

               
               cje (2.47852)
               

               
               cmu (2.05033)
               

               
               sme (1.83262)
               

               
               aor (1.56219)
               

               
               csk (1.40746)
               

               
               cst (1.26033)
               

               
               cut (1.18946)
               

               
               vin (0.997672)
               

               
               bfe (0.899146)
               

               
               spc (0.680195)
               

               
               nlu (0.575043)
               

               
               sag (0.548145)
               

               
               fce (0.543183)
               

               
               rec (0.519211)
               

               
               cbe (0.478469)
               

               
               lnt (0.426925)
               

               
               mas (0.42061)
               

               
               ssp (0.406559)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               isp (0.300752)
               

               
               nmm (0.265604)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               nbm (0.198649)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	28-492, gnl\|bosTau2\|chr22 (16579540-16580004)
	28-492, gnl\|Hg17\|chr5 (81224025-81224483)

	213-480, gnl\|bosTau2\|chr21 (37174858-37174595)
	213-480, gnl\|Hg17\|chr5 (81224176-81224470)

	che (4.49836)
	cte (3.80562)
	sto (2.69736)
	cki (2.64375)
	cje (2.47852)
	cmu (2.05033)
	sme (1.83262)
	aor (1.56219)
	csk (1.40746)
	cst (1.26033)
	cut (1.18946)
	vin (0.997672)
	bfe (0.899146)
	spc (0.680195)
	nlu (0.575043)
	sag (0.548145)
	fce (0.543183)
	rec (0.519211)
	cbe (0.478469)
	lnt (0.426925)
	mas (0.42061)
	ssp (0.406559)
	nje (0.33184)
	mga (0.32041)
	fco (0.314416)
	isp (0.300752)
	nmm (0.265604)
	mgp (0.230681)
	ece (0.229305)
	jca (0.22792)
	nms (0.213858)
	tes (0.207814)
	hea (0.204499)
	fli (0.202881)
	nbm (0.198649)
	fcc (0.197785)
	nep (0.183925)
	gul (0.177588)
	fty (0.17584)
	ill (0.175593)
	fbs (0.175346)
	nco (0.161734)
	csp (0.161186)
	eli (0.151814)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	nca (0.136874)
	pla (0.133672)
	ova (0.129132)
	ret (0.128733)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	pgl (0.118483)
	med (0.116252)