Non-Coding RNA Search

Ss1.1-rche19_a23.5

Sequence:


               
               CTCTGCCATGGAATGTCTTACCCAATTTCGGGCTTAGTGAAGACATATAGAGCAAAGGAT
TATAATGTGGATCACCCACTGGTGCCTCATGGCCTCTCTGTGGTACTCACCTCCCCAGCA
GTATTCACGTTCACGGCACAGATGTCACCTGAGCGACACCTGGAGACAGCAGGAATACTA
GGAGCCGACATCCGCACGGCCAGGACCCCAGATGCTGGGCCCATTTTGGCAGACACTCTG
CGAAAATTCTTATTTGATCTGGATGTGGACGATGGCCTGGCTGCCCTTGGTTACTCCAAG
GCCGACATCCCCGCCTTAGTGAAAGGGACACTGCCCCAGGAAAGGGTCACCAAGCTTGCA
CCACGCCCTCAGTCAGAAGAGGATCTGTCTGCCCTGTTTGAAGCGTCAATGAAACTGTAT
TAATTTTCACTGAAAGAATTACCTTTGGCCAATTCTGTTCTGAAAACAGAAGTTGATCTA
GCAAGAGCTTTGTCTTTACACCTCCACACAGAACTTCCCTGTTACCAGCTTGCATGTGAT
ATAAATTTATCCTGCAAAGAATGTATATATGACTGAGTCACTTGGCTATGCAGCAGAAAT
TGGCACAACATTATAATCAACTACACTTTAATAAAAAATTTTTAATTACAAAAAAAAGAA
TATAAATTTACCCTGCAGAAGATTCTCTGATGCTCCCAGTCCCTCTGCTTCTATAGAACA
GGCGGGACAAGTACCCTCTATGCTGGACCCTCGGCCAGGCTCCAGGGATCCAAGTTTCTG
CCCCAGCCCTGCAGACTGCCCCTGCTTCATGTATCAAAAAGACAAAAACTCTGTATCCAC
CCAAACTGTTAATGTATACATCCTATGCTCAGTAATCAATCCCACGTCTAGAAATGTTTC
CTATAGAAATACTAGCACAAGTGTGTAAAGATATATGGCAAGGGCATTTCTGGCAGCACA
TTTTCTAATAATAAAAAATGTGAATGAACTTAAGTATTCATGAATGGTATACAGATAAAG
AAATCATAGAATATTAAAGAATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGCCATGGAATGTCTTACCCAATTTCGGGCTTAGTGAAGACATATAGAGCAAAGGAT
TATAATGTGGATCACCCACTGGTGCCTCATGGCCTCTCTGTGGTACTCACCTCCCCAGCA
GTATTCACGTTCACGGCACAGATGTCACCTGAGCGACACCTGGAGACAGCAGGAATACTA
GGAGCCGACATCCGCACGGCCAGGACCCCAGATGCTGGGCCCATTTTGGCAGACACTCTG
CGAAAATTCTTATTTGATCTGGATGTGGACGATGGCCTGGCTGCCCTTGGTTACTCCAAG
GCCGACATCCCCGCCTTAGTGAAAGGGACACTGCCCCAGGAAAGGGTCACCAAGCTTGCA
CCACGCCCTCAGTCAGAAGAGGATCTGTCTGCCCTGTTTGAAGCGTCAATGAAACTGTAT
TAATTTTCACTGAAAGAATTACCTTTGGCCAATTCTGTTCTGAAAACAGAAGTTGATCTA
GCAAGAGCTTTGTCTTTACACCTCCACACAGAACTTCCCTGTTACCAGCTTGCATGTGAT
ATAAATTTATCCTGCAAAGAATGTATATATGACTGAGTCACTTGGCTATGCAGCAGAAAT
TGGCACAACATTATAATCAACTACACTTTAATAAAAAATTTTTAATTACAAAAAAAAGAA
TATAAATTTACCCTGCAGAAGATTCTCTGATGCTCCCAGTCCCTCTGCTTCTATAGAACA
GGCGGGACAAGTACCCTCTATGCTGGACCCTCGGCCAGGCTCCAGGGATCCAAGTTTCTG
CCCCAGCCCTGCAGACTGCCCCTGCTTCATGTATCAAAAAGACAAAAACTCTGTATCCAC
CCAAACTGTTAATGTATACATCCTATGCTCAGTAATCAATCCCACGTCTAGAAATGTTTC
CTATAGAAATACTAGCACAAGTGTGTAAAGATATATGGCAAGGGCATTTCTGGCAGCACA
TTTTCTAATAATAAAAAATGTGAATGAACTTAAGTATTCATGAATGGTATACAGATAAAG
AAATCATAGAATATTAAAGAATGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q68CI7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q68CI7_HUMAN

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               330-560, gnl|bosTau2|chr14 (19213671-19213434)
               

               
               330-560, gnl|Hg17|chr8 (67543048-67543285)
               

               
               330-560, gnl|Mm7|chr1 (9718908-9719151)
               


               
               660-1027, gnl|bosTau2|chr14 (19213456-19213089)
               

               
               660-1027, gnl|Hg17|chr8 (67543263-67543627)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               330-560, gnl|bosTau2|chr14 (19213671-19213434)
               

               
               330-560, gnl|Hg17|chr8 (67543048-67543285)
               

               
               330-560, gnl|Mm7|chr1 (9718908-9719151)
               


               
               660-1027, gnl|bosTau2|chr14 (19213456-19213089)
               

               
               660-1027, gnl|Hg17|chr8 (67543263-67543627)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fat (0.58971)
               

               
               cli (0.305623)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.58971)
               

               
               cli (0.305623)
               

               
               sto (0.179824)
               

               
               mcp (0.170648)
               

               
               mga (0.160205)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               ldo (0.0970026)

	330-560, gnl\|bosTau2\|chr14 (19213671-19213434)
	330-560, gnl\|Hg17\|chr8 (67543048-67543285)
	330-560, gnl\|Mm7\|chr1 (9718908-9719151)

	660-1027, gnl\|bosTau2\|chr14 (19213456-19213089)
	660-1027, gnl\|Hg17\|chr8 (67543263-67543627)

	fat (0.58971)
	cli (0.305623)
	sto (0.179824)
	mcp (0.170648)
	mga (0.160205)
	hyp (0.142837)
	hlv (0.139256)
	che (0.136314)
	sug (0.127291)
	ldo (0.0970026)