Non-Coding RNA Search

Ss1.1-rche19_d11.5

Sequence:


               
               AGCCTGGTGCCCTAGTGCCTGTTACCGCCGTCAAGGCCATCCATCTGCGAGCTGTAACCC
TGGCTGGGGCGTGGGGAACAGCCACTGGGGACGGGGCAATAAAAGGCAAAGGAGAGAAAT
GATCAGAATTGTTTACTGACCACGTTTTTTTAAAGGAAGCCCACCTTTCTTGGTTGGAGA
GCCTGTTGTGTAATTAATTAGTTGTGTCTTGGCTGCAGGAAGGGGAGTCAGAGTTGCAGG
CAGAAGATACACCATGAGAGGCAATGAGCAGCAGGGGTAAAAGCAAGATGCACTGAGGAT
GCGAACAAGTGGCAGACAGGCCCGAGGGTATCTGCCTGAGTGAGGACAGGCTTGGTGAGC
CTAAAGCTGGAGGAACCCTGGCGCTGCTGCTTTCACAGGCACCCAGGAGAAATGAACCTT
CAGCAGCCGACACCAGGAGTGGTTGGCACATATTTACAGCCATAGTAGGAAACAAAACAT
GAAGCTGGGAATGGCAGATCTCTGCCACTTGTACCATTTGGGCATCTTGAGCCCATGCAC
ACGCCACCAATAAAGCAGTCGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCTGGTGCCCTAGTGCCTGTTACCGCCGTCAAGGCCATCCATCTGCGAGCTGTAACCC
TGGCTGGGGCGTGGGGAACAGCCACTGGGGACGGGGCAATAAAAGGCAAAGGAGAGAAAT
GATCAGAATTGTTTACTGACCACGTTTTTTTAAAGGAAGCCCACCTTTCTTGGTTGGAGA
GCCTGTTGTGTAATTAATTAGTTGTGTCTTGGCTGCAGGAAGGGGAGTCAGAGTTGCAGG
CAGAAGATACACCATGAGAGGCAATGAGCAGCAGGGGTAAAAGCAAGATGCACTGAGGAT
GCGAACAAGTGGCAGACAGGCCCGAGGGTATCTGCCTGAGTGAGGACAGGCTTGGTGAGC
CTAAAGCTGGAGGAACCCTGGCGCTGCTGCTTTCACAGGCACCCAGGAGAAATGAACCTT
CAGCAGCCGACACCAGGAGTGGTTGGCACATATTTACAGCCATAGTAGGAAACAAAACAT
GAAGCTGGGAATGGCAGATCTCTGCCACTTGTACCATTTGGGCATCTTGAGCCCATGCAC
ACGCCACCAATAAAGCAGTCGTTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               178-292, - strand, RNAz p=0.505713
               

               
               346-464, - strand, RNAz p=0.730037

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-292, - strand, RNAz p=0.505713
               

               
               346-464, - strand, RNAz p=0.730037

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               19-464, gnl|bosTau2|chr19 (8984919-8984483)
               

               
               19-464, gnl|Hg17|chr17 (30451022-30450617)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-464, gnl|bosTau2|chr19 (8984919-8984483)
               

               
               19-464, gnl|Hg17|chr17 (30451022-30450617)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eye (0.170503)
               

               
               cki (0.165235)
               

               
               che (0.136314)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               che (0.136314)

	178-292, - strand, RNAz p=0.505713
	346-464, - strand, RNAz p=0.730037

	19-464, gnl\|bosTau2\|chr19 (8984919-8984483)
	19-464, gnl\|Hg17\|chr17 (30451022-30450617)