Ss1.1-rche19_o19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCGCCGCTCCTGCGGCGCCCGGAGCCCCGGGCCATGCGGCCGCTGCTCGTTCTGCTGC CGCTGGTGCTGCCACCGCTGCTGCTGTTCGGCAGATGCGGCGCCGCGGCGTCCCCGGCAG ATGCTCCTCCTCAGCTGCCACCTCCTCAAAACCTGAAGGTGCGTCTGTACAATGCCCAGC AGGCTCTGAGCTGGGATCCTGTGACCCTGAGCAATGACACGAGGCCGGTGGTCTACCAGG TGCAATACAGATACAGCACCAGTCACAACTGGTACGACGTCAACAAAAGAGACATCAGCG TGGATTGTACGAACCTCAGCAGGACGGAGTGTGACTTTACCGCCAACAGCCTCTCCAAGG GTTTCCCACGGCAGTTCAACATCTCCCTACGTGTTCGCGCCAAGGTGGGGGACCGCGTTT CCCCTTGGGTGACAGCGCCTTGGTTCGAACACTATCGGAATGCTACCATCGGGCCTCCAG AAAACATCTGGGTGACCCCAGAAGAAGGCTCCCTCATCATCAGGTTTTCCTCTCCTTTTG ACGTCCCTGCCTCGGTGGCCTTTTTCTTGTATTATGTCTATTACAGGGAGATGGCGGGAA TCCAACAGGTGACGCAGCCTTTCAGGAACAACTTCATCACACTGAATGATTTAAAACCCT TAAGAGTATACTGTTTTCAAGTCAAAGCAGAACTGTTTTTGGTCAAAGAAAACATCTCTA GATCCGGGCATTTAAGCAACATATCTTGCTCCGAAACAACAGCCGATGCGTCTACCAAGC TGCAGCAAGTCATCCTGATTGCCGTGGGAACCTTTCTGTTGCTGTTGGTGGTGGTCGGGG CCTGTCTCTTTCTGGTCCTGAAATTCAGAGGCCTGGTTAAATACTGGTTTCACTCTCCGC CCAGAATCCCGGTACAAATAGAAGAGTATTTAAAGGACCCGGCTCAGCCCATCTTAGACG CCTTGGACAAGGACAGCTCGTCAAGAGATGATGCCTGGGACTCTGTGTCCATCGTTTCAT TTCCAGAGAATCATCGAGAAGACACTCTCCAAAGCACTTTGACCCAAAGCACTGTCTCGA GCCACAAGCCTATGGATGGAGCACCCTCAGCCAATACAGCTGCTGATGTATCTGTCCCGG TTTGATGGAGCCACTGCTCAATGTCCCTGTCACAAAAAGACCTATGGGTGGAGTTCCCTG GTGGCTCAGTGGGTTAAGGATCCCTTGGTGTCACTGCTGAGGTTCTGGTCCCTGCCATGG CATGGGTTCAATCCCTGGCCTGGGAACTTCCACATGCCATGGATGTGGCCAAAAAGACCC CAAAGACCCATGAGTACCTGGGCAGAGGTCATGGGTCTTGTGGGAGAGACAAACTTTTAT TTTTTAACCAAAAATTTCCTAAATCATACATGTGTTTAGCATGATTCTACATACCAAAAA AATAAGGTTTCTCTTAAACACTAAAAAAGCACTTAATTATTTGTTAGCCAAGTGGCATCC CCTCTGATATTTTGTACATTGCTGGTTGGGCCGTGCAGTCAGGAGACGGGGGTCCCCTCT AGCAAGAAACTTGAGCACTTCGGGCAGGTAACAGAACCTGTCCCAGCCTGTGCCAACAAG GCTGTCCCTTTCACGTGCAGATTCCTGGCTTTAAATGTGATTAAAACTGTAAATAATTTT CTAGTAACTTAAGGGTCTTTTTTTTTTTTTAAGCTGGAAATAAACAACTGTATAATTAAC AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCGCCGCTCCTGCGGCGCCCGGAGCCCCGGGCCATGCGGCCGCTGCTCGTTCTGCTGC CGCTGGTGCTGCCACCGCTGCTGCTGTTCGGCAGATGCGGCGCCGCGGCGTCCCCGGCAG ATGCTCCTCCTCAGCTGCCACCTCCTCAAAACCTGAAGGTGCGTCTGTACAATGCCCAGC AGGCTCTGAGCTGGGATCCTGTGACCCTGAGCAATGACACGAGGCCGGTGGTCTACCAGG TGCAATACAGATACAGCACCAGTCACAACTGGTACGACGTCAACAAAAGAGACATCAGCG TGGATTGTACGAACCTCAGCAGGACGGAGTGTGACTTTACCGCCAACAGCCTCTCCAAGG GTTTCCCACGGCAGTTCAACATCTCCCTACGTGTTCGCGCCAAGGTGGGGGACCGCGTTT CCCCTTGGGTGACAGCGCCTTGGTTCGAACACTATCGGAATGCTACCATCGGGCCTCCAG AAAACATCTGGGTGACCCCAGAAGAAGGCTCCCTCATCATCAGGTTTTCCTCTCCTTTTG ACGTCCCTGCCTCGGTGGCCTTTTTCTTGTATTATGTCTATTACAGGGAGATGGCGGGAA TCCAACAGGTGACGCAGCCTTTCAGGAACAACTTCATCACACTGAATGATTTAAAACCCT TAAGAGTATACTGTTTTCAAGTCAAAGCAGAACTGTTTTTGGTCAAAGAAAACATCTCTA GATCCGGGCATTTAAGCAACATATCTTGCTCCGAAACAACAGCCGATGCGTCTACCAAGC TGCAGCAAGTCATCCTGATTGCCGTGGGAACCTTTCTGTTGCTGTTGGTGGTGGTCGGGG CCTGTCTCTTTCTGGTCCTGAAATTCAGAGGCCTGGTTAAATACTGGTTTCACTCTCCGC CCAGAATCCCGGTACAAATAGAAGAGTATTTAAAGGACCCGGCTCAGCCCATCTTAGACG CCTTGGACAAGGACAGCTCGTCAAGAGATGATGCCTGGGACTCTGTGTCCATCGTTTCAT TTCCAGAGAATCATCGAGAAGACACTCTCCAAAGCACTTTGACCCAAAGCACTGTCTCGA GCCACAAGCCTATGGATGGAGCACCCTCAGCCAATACAGCTGCTGATGTATCTGTCCCGG TTTGATGGAGCCACTGCTCAATGTCCCTGTCACAAAAAGACCTATGGGTGGAGTTCCCTG GTGGCTCAGTGGGTTAAGGATCCCTTGGTGTCACTGCTGAGGTTCTGGTCCCTGCCATGG CATGGGTTCAATCCCTGGCCTGGGAACTTCCACATGCCATGGATGTGGCCAAAAAGACCC CAAAGACCCATGAGTACCTGGGCAGAGGTCATGGGTCTTGTGGGAGAGACAAACTTTTAT TTTTTAACCAAAAATTTCCTAAATCATACATGTGTTTAGCATGATTCTACATACCAAAAA AATAAGGTTTCTCTTAAACACTAAAAAAGCACTTAATTATTTGTTAGCCAAGTGGCATCC CCTCTGATATTTTGTACATTGCTGGTTGGGCCGTGCAGTCAGGAGACGGGGGTCCCCTCT AGCAAGAAACTTGAGCACTTCGGGCAGGTAACAGAACCTGTCCCAGCCTGTGCCAACAAG GCTGTCCCTTTCACGTGCAGATTCCTGGCTTTAAATGTGATTAAAACTGTAAATAATTTT CTAGTAACTTAAGGGTCTTTTTTTTTTTTTAAGCTGGAAATAAACAACTGTATAATTAAC AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1545-1635, - strand, RNAz p=0.549636 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1545-1635, - strand, RNAz p=0.549636 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 254-465, gnl|bosTau2|chr1 (1164837-1165048) | |
| 254-465, gnl|Hg17|chr21 (33715654-33715865) | |
| 254-465, gnl|Mm7|chr16 (91608228-91608427) | |
| 606-768, gnl|bosTau2|chr1 (1173454-1173616) | |
| 606-768, gnl|canFam2|chr31 (31061277-31061440) | |
| 606-768, gnl|dasNov1|scaffold_18220 (38992-38829) | |
| 606-768, gnl|echTel1|scaffold_310566 (63026-63189) | |
| 606-768, gnl|hg17|chr21 (33726350-33726513) | |
| 606-768, gnl|Hg17|chr21 (33726351-33726513) | |
| 606-768, gnl|mm7|chr16 (91610887-91611050) | |
| 606-768, gnl|Mm7|chr16 (91610888-91611050) | |
| 606-768, gnl|oryCun1|scaffold_148050 (9273-9436) | |
| 606-768, gnl|panTro1|chr22 (33701980-33702143) | |
| 606-768, gnl|rheMac2|chr3 (13122194-13122031) | |
| 606-768, gnl|rn3|chr11 (31561864-31562027) | |
| 925-1188, gnl|bosTau2|chr1 (1178361-1178623) | |
| 925-1188, gnl|Hg17|chr21 (33731003-33731257) | |
| 1398-1740, gnl|bosTau2|chr1 (1178856-1179217) | |
| 1398-1740, gnl|canFam2|chr31 (31066915-31067262) | |
| 1398-1740, gnl|dasNov1|scaffold_18220 (36055-35742) | |
| 1398-1740, gnl|echTel1|scaffold_267453 (2861-2463) | |
| 1398-1740, gnl|hg17|chr21 (33731314-33731665) | |
| 1398-1740, gnl|Hg17|chr21 (33731340-33731674) | |
| 1398-1740, gnl|loxAfr1|scaffold_72932 (30391-30782) | |
| 1398-1740, gnl|mm7|chr16 (91613450-91613895) | |
| 1398-1740, gnl|Mm7|chr16 (91613465-91613913) | |
| 1398-1740, gnl|oryCun1|scaffold_105932 (5122-5485) | |
| 1398-1740, gnl|panTro1|chr22 (33706951-33707307) | |
| 1398-1740, gnl|rheMac2|chr3 (13117281-13116918) | |
| 1398-1740, gnl|rn3|chr11 (31564669-31565081) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 254-465, gnl|bosTau2|chr1 (1164837-1165048) | |
| 254-465, gnl|Hg17|chr21 (33715654-33715865) | |
| 254-465, gnl|Mm7|chr16 (91608228-91608427) | |
| 606-768, gnl|bosTau2|chr1 (1173454-1173616) | |
| 606-768, gnl|canFam2|chr31 (31061277-31061440) | |
| 606-768, gnl|dasNov1|scaffold_18220 (38992-38829) | |
| 606-768, gnl|echTel1|scaffold_310566 (63026-63189) | |
| 606-768, gnl|hg17|chr21 (33726350-33726513) | |
| 606-768, gnl|Hg17|chr21 (33726351-33726513) | |
| 606-768, gnl|mm7|chr16 (91610887-91611050) | |
| 606-768, gnl|Mm7|chr16 (91610888-91611050) | |
| 606-768, gnl|oryCun1|scaffold_148050 (9273-9436) | |
| 606-768, gnl|panTro1|chr22 (33701980-33702143) | |
| 606-768, gnl|rheMac2|chr3 (13122194-13122031) | |
| 606-768, gnl|rn3|chr11 (31561864-31562027) | |
| 925-1188, gnl|bosTau2|chr1 (1178361-1178623) | |
| 925-1188, gnl|Hg17|chr21 (33731003-33731257) | |
| 1398-1740, gnl|bosTau2|chr1 (1178856-1179217) | |
| 1398-1740, gnl|canFam2|chr31 (31066915-31067262) | |
| 1398-1740, gnl|dasNov1|scaffold_18220 (36055-35742) | |
| 1398-1740, gnl|echTel1|scaffold_267453 (2861-2463) | |
| 1398-1740, gnl|hg17|chr21 (33731314-33731665) | |
| 1398-1740, gnl|Hg17|chr21 (33731340-33731674) | |
| 1398-1740, gnl|loxAfr1|scaffold_72932 (30391-30782) | |
| 1398-1740, gnl|mm7|chr16 (91613450-91613895) | |
| 1398-1740, gnl|Mm7|chr16 (91613465-91613913) | |
| 1398-1740, gnl|oryCun1|scaffold_105932 (5122-5485) | |
| 1398-1740, gnl|panTro1|chr22 (33706951-33707307) | |
| 1398-1740, gnl|rheMac2|chr3 (13117281-13116918) | |
| 1398-1740, gnl|rn3|chr11 (31564669-31565081) |
| Expressed library(ies): 21 entry(ies) | More info |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
| cje (0.660939) | |
| cmu (0.55918) | |
| che (0.545256) | |
| cst (0.420109) | |
| mcp (0.341297) | |
| sme (0.305437) | |
| cov (0.264306) | |
| cly (0.241284) | |
| ece (0.229305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 21 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.660939) | |
| cmu (0.55918) | |
| che (0.545256) | |
| cst (0.420109) | |
| mcp (0.341297) | |
| sme (0.305437) | |
| cov (0.264306) | |
| cly (0.241284) | |
| ece (0.229305) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| sug (0.127291) | |
| clu (0.119646) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| jej (0.0989218) |