Ss1.1-rche20_c11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCTTGTTGACATTACAAGCTTTTAACACATTTTTGACTTAGGAGCTTTGTTGCTGGAA GTGTAAGTCCCCAGCCAGTTACTCCCATGATGATATTACTGATGTGTAACTCATTCTTGT GTGGTGTGCTGTGCTATAGAGTCTGTGTAGTGCTATCCATATTCAGAGTTCTGGTTTGTT TTCTTTGTTTTTCCTTTAAAACCTGTTAGAGTTTTCCCTTTTTTTTGGAAAAAAAGGAAA TCAGAACTCTGTTTCCCATTCCATAAGCCCTGACATTATTTCACGTTTTATAGTATTTTA AGATGTATATTTTATTTTATTTTTTTGGCTTAGTGTTTTTAATTATTAATCAGTCCAGAA AAATTTGGCTTCTTTTTTCTCATGGGGAAACAGTGAACATTATGCTTGATCCCACAATTT TTAGTAAAAGAACTAAGTTTGTTTAACCTTCAGGATTTCTCCTTAATATATCTTCATCTG AGAATTTCTTTCAAGAGAGTTCTTTATAATCTTAATGGTTTGTTGAGTTATAAGAACTGC CATTTAAAAAATAATAGGACAACAGATGGTTTATTGTTTAATATACCTATGGAATATGTA CAAACTGGATCTACAAACAGATAACTTTAAATTAGACCAGGGATATTGAAGTAACCCATC AAAATGTGCTCTGCAGTGATTCTGCTTAACGTTCAAGTTCAGTAACTAAGGCATCTGCTT CATGCTCCGCTTGCAAAGCACATGGCATGGCTTTTGTGTGTTGGAGGATGGATTTGTGAT TTGTGCTGAGAGCCACTTCTGATTGTGAGGGATAGAACTTGGGCTGATTTTTTTCTTGTC AAGTTTCTTTCTAGGAATTTTTGGTTTTGTCTTTAAAAAACAAAACAAAACATACTTTCT TGAATGTATCATGTCTTCATTAACAACCGAAAATATATATGGTGTTTACTAAACTTGTTT ACTATATTAAAATTTCCTTTTTATTTTTAGAAACCCAGTTCTTGAGTTTTTTAAGACAGA TTTTTGTTTTTTCTTAGCTGAGGTATAGTTCTAGGGAGGAGAATTAATTAAGCCAGTTTT GTGTGAGAAAAAACAGTTTGCTATCCAGGTCTTTTTCTGTTGTCAGAGGGTGGGAATATG GTCCAAACAAACCCTATTAGGTTACTCCTGCAGCATGTGCTTTTAGCTGCTCTCTTGACT AAGGATCAAATAGCCCTTTGTGATCTGGCCTTCAGCTCCTTTGCTTCTGTGTATGAACCT TGGATGTTACTATATTTCATATTTACCAGAGCTATTCGAGCAATAGTATATAAACCACTA GCCTTTTTAAATAAAAGTCTGCCCCATTGCTAATGTGCAGAAATTGAGTCCACTTTCATT TCTTGACAGCTTTTCTTTGTACTGCTTTAGGCAGAAAGTATGTATCTATTTTTCTTTGAC TGACACCCCAGTTTGCTGCAGTGACAGAACTTAATTTTTGATCTTTGAATTTCATATATG TATATATATATGACATTTAATGCACTGTCTAAGTGGAACTGTCTTGTTGTCATTGTGATT AAGGGGCCAACTTTCCAGGCAGCTAGCAGAGGTGTTATTGTGTTCATCTCCCAGCAAATT TTAATTCCTTTGCCCACCCATTCCCTCTACACTAGGTGGCAGTTGGCGATGGCACAATAA AGGTTTCTGCAGTACCATCTTGGACATTGCAGGCTGAAGACTTACTACCAAGGTTGATCT GGGGCATGTTGTTTTGCTGCCTGCATATTCTAGACTGCCATGGGCAGTGCACCTTGAGTC TGTTTGAAGATCTGTCTAAGCCTGAATTTTTTTGTCAAATATCTTAACCCAGCAAAACAA CTCTTGAGTAGCTCATGCCTTGCTCTTAGGAATTCTGTCTCTTGTTTAAAAAATAATGTT CATCTCTCTTTTTTATTTGTTTTTATCTAGTCACTGTTTACAGTTGTATGCTAAAGCCTG AAATATTGTCTGTGCTGTGGTGTTTGAGCATTGCCAATTTTATATTTATTGCAGCGAAGA AGAAACTAAAGATATATGAAAACAAGGAGCATGGCCACGCTCCTAAATCTGTGTGGGTGC ATGTGGGAGAAGAGAGTTGGGGTCTCTTAAAAGGAGGCTTTTGGGATGGGGTCTCCCAGG CTTCTCCTTGGTGTTCCTGCTTGGGGATCACTGCTGCTAGCTGACTGGACCTCCCCAACG GAAGTTTGTGATTCCGCTTTGGCAACATTTCATTGACTAGTAGAACTCATTCTGTTTTAG TGCATATTTCAATATAAATGTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCTTGTTGACATTACAAGCTTTTAACACATTTTTGACTTAGGAGCTTTGTTGCTGGAA GTGTAAGTCCCCAGCCAGTTACTCCCATGATGATATTACTGATGTGTAACTCATTCTTGT GTGGTGTGCTGTGCTATAGAGTCTGTGTAGTGCTATCCATATTCAGAGTTCTGGTTTGTT TTCTTTGTTTTTCCTTTAAAACCTGTTAGAGTTTTCCCTTTTTTTTGGAAAAAAAGGAAA TCAGAACTCTGTTTCCCATTCCATAAGCCCTGACATTATTTCACGTTTTATAGTATTTTA AGATGTATATTTTATTTTATTTTTTTGGCTTAGTGTTTTTAATTATTAATCAGTCCAGAA AAATTTGGCTTCTTTTTTCTCATGGGGAAACAGTGAACATTATGCTTGATCCCACAATTT TTAGTAAAAGAACTAAGTTTGTTTAACCTTCAGGATTTCTCCTTAATATATCTTCATCTG AGAATTTCTTTCAAGAGAGTTCTTTATAATCTTAATGGTTTGTTGAGTTATAAGAACTGC CATTTAAAAAATAATAGGACAACAGATGGTTTATTGTTTAATATACCTATGGAATATGTA CAAACTGGATCTACAAACAGATAACTTTAAATTAGACCAGGGATATTGAAGTAACCCATC AAAATGTGCTCTGCAGTGATTCTGCTTAACGTTCAAGTTCAGTAACTAAGGCATCTGCTT CATGCTCCGCTTGCAAAGCACATGGCATGGCTTTTGTGTGTTGGAGGATGGATTTGTGAT TTGTGCTGAGAGCCACTTCTGATTGTGAGGGATAGAACTTGGGCTGATTTTTTTCTTGTC AAGTTTCTTTCTAGGAATTTTTGGTTTTGTCTTTAAAAAACAAAACAAAACATACTTTCT TGAATGTATCATGTCTTCATTAACAACCGAAAATATATATGGTGTTTACTAAACTTGTTT ACTATATTAAAATTTCCTTTTTATTTTTAGAAACCCAGTTCTTGAGTTTTTTAAGACAGA TTTTTGTTTTTTCTTAGCTGAGGTATAGTTCTAGGGAGGAGAATTAATTAAGCCAGTTTT GTGTGAGAAAAAACAGTTTGCTATCCAGGTCTTTTTCTGTTGTCAGAGGGTGGGAATATG GTCCAAACAAACCCTATTAGGTTACTCCTGCAGCATGTGCTTTTAGCTGCTCTCTTGACT AAGGATCAAATAGCCCTTTGTGATCTGGCCTTCAGCTCCTTTGCTTCTGTGTATGAACCT TGGATGTTACTATATTTCATATTTACCAGAGCTATTCGAGCAATAGTATATAAACCACTA GCCTTTTTAAATAAAAGTCTGCCCCATTGCTAATGTGCAGAAATTGAGTCCACTTTCATT TCTTGACAGCTTTTCTTTGTACTGCTTTAGGCAGAAAGTATGTATCTATTTTTCTTTGAC TGACACCCCAGTTTGCTGCAGTGACAGAACTTAATTTTTGATCTTTGAATTTCATATATG TATATATATATGACATTTAATGCACTGTCTAAGTGGAACTGTCTTGTTGTCATTGTGATT AAGGGGCCAACTTTCCAGGCAGCTAGCAGAGGTGTTATTGTGTTCATCTCCCAGCAAATT TTAATTCCTTTGCCCACCCATTCCCTCTACACTAGGTGGCAGTTGGCGATGGCACAATAA AGGTTTCTGCAGTACCATCTTGGACATTGCAGGCTGAAGACTTACTACCAAGGTTGATCT GGGGCATGTTGTTTTGCTGCCTGCATATTCTAGACTGCCATGGGCAGTGCACCTTGAGTC TGTTTGAAGATCTGTCTAAGCCTGAATTTTTTTGTCAAATATCTTAACCCAGCAAAACAA CTCTTGAGTAGCTCATGCCTTGCTCTTAGGAATTCTGTCTCTTGTTTAAAAAATAATGTT CATCTCTCTTTTTTATTTGTTTTTATCTAGTCACTGTTTACAGTTGTATGCTAAAGCCTG AAATATTGTCTGTGCTGTGGTGTTTGAGCATTGCCAATTTTATATTTATTGCAGCGAAGA AGAAACTAAAGATATATGAAAACAAGGAGCATGGCCACGCTCCTAAATCTGTGTGGGTGC ATGTGGGAGAAGAGAGTTGGGGTCTCTTAAAAGGAGGCTTTTGGGATGGGGTCTCCCAGG CTTCTCCTTGGTGTTCCTGCTTGGGGATCACTGCTGCTAGCTGACTGGACCTCCCCAACG GAAGTTTGTGATTCCGCTTTGGCAACATTTCATTGACTAGTAGAACTCATTCTGTTTTAG TGCATATTTCAATATAAATGTAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 160-277, + strand, RNAz p=0.995565 | |
| 177-282, - strand, RNAz p=0.513583 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 160-277, + strand, RNAz p=0.995565 | |
| 177-282, - strand, RNAz p=0.513583 |
| Predicted microRNA(s): 1 entry(ies) | More info |
| Predicted microRNA(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 144-270, + strand, RNAmicro p=0.999969 |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-282, gnl|bosTau2|chr15 (9171243-9171520) | |
| 1-282, gnl|canFam2|chr5 (19428235-19427732) | |
| 1-282, gnl|dasNov1|scaffold_24142 (10792-10316) | |
| 1-282, gnl|echTel1|scaffold_241783 (5964-5511) | |
| 1-282, gnl|Hg17|chr11 (116544399-116545019) | |
| 1-282, gnl|hg17|chrX (24808777-24809291) | |
| 1-282, gnl|loxAfr1|scaffold_15626 (5610-5202) | |
| 1-282, gnl|mm7|chr9 (45926373-45925956) | |
| 1-282, gnl|Mm7|chr9 (45926161-45925922) | |
| 1-282, gnl|monDom2|scaffold_2 (122108981-122108471) | |
| 1-282, gnl|oryCun1|scaffold_214625 (38629-39072) | |
| 1-282, gnl|panTro1|chrX (25629049-25629569) | |
| 1-282, gnl|rheMac2|chrX (22863543-22864038) | |
| 1-282, gnl|rn3|chr8 (48948034-48947615) | |
| 426-861, gnl|bosTau2|chr15 (9171644-9172082) | |
| 426-861, gnl|canFam2|chr5 (19426594-19427527) | |
| 426-861, gnl|dasNov1|scaffold_24142 (9331-10163) | |
| 426-861, gnl|echTel1|scaffold_241783 (4463-5315) | |
| 426-861, gnl|Hg17|chr11 (116545128-116545511) | |
| 426-861, gnl|hg17|chr12 (96626485-96627421) | |
| 426-861, gnl|loxAfr1|scaffold_15626 (4008-4941) | |
| 426-861, gnl|mm7|chr9 (45924444-45925313) | |
| 426-861, gnl|monDom2|scaffold_2 (122107272-122108274) | |
| 426-861, gnl|oryCun1|scaffold_214625 (40142-39276) | |
| 426-861, gnl|panTro1|chr10 (99055405-99056349) | |
| 426-861, gnl|rheMac2|chr11 (98917792-98918733) | |
| 426-861, gnl|rn3|chr8 (88291243-88290430) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-282, gnl|bosTau2|chr15 (9171243-9171520) | |
| 1-282, gnl|canFam2|chr5 (19428235-19427732) | |
| 1-282, gnl|dasNov1|scaffold_24142 (10792-10316) | |
| 1-282, gnl|echTel1|scaffold_241783 (5964-5511) | |
| 1-282, gnl|Hg17|chr11 (116544399-116545019) | |
| 1-282, gnl|hg17|chrX (24808777-24809291) | |
| 1-282, gnl|loxAfr1|scaffold_15626 (5610-5202) | |
| 1-282, gnl|mm7|chr9 (45926373-45925956) | |
| 1-282, gnl|Mm7|chr9 (45926161-45925922) | |
| 1-282, gnl|monDom2|scaffold_2 (122108981-122108471) | |
| 1-282, gnl|oryCun1|scaffold_214625 (38629-39072) | |
| 1-282, gnl|panTro1|chrX (25629049-25629569) | |
| 1-282, gnl|rheMac2|chrX (22863543-22864038) | |
| 1-282, gnl|rn3|chr8 (48948034-48947615) | |
| 426-861, gnl|bosTau2|chr15 (9171644-9172082) | |
| 426-861, gnl|canFam2|chr5 (19426594-19427527) | |
| 426-861, gnl|dasNov1|scaffold_24142 (9331-10163) | |
| 426-861, gnl|echTel1|scaffold_241783 (4463-5315) | |
| 426-861, gnl|Hg17|chr11 (116545128-116545511) | |
| 426-861, gnl|hg17|chr12 (96626485-96627421) | |
| 426-861, gnl|loxAfr1|scaffold_15626 (4008-4941) | |
| 426-861, gnl|mm7|chr9 (45924444-45925313) | |
| 426-861, gnl|monDom2|scaffold_2 (122107272-122108274) | |
| 426-861, gnl|oryCun1|scaffold_214625 (40142-39276) | |
| 426-861, gnl|panTro1|chr10 (99055405-99056349) | |
| 426-861, gnl|rheMac2|chr11 (98917792-98918733) | |
| 426-861, gnl|rn3|chr8 (88291243-88290430) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| hyp (0.571347) | |
| fbs (0.526039) | |
| pro (0.512033) | |
| ece (0.45861) | |
| tes (0.415628) | |
| aor (0.390549) | |
| ova (0.387397) | |
| che (0.272628) | |
| kid (0.259471) | |
| cbr (0.255951) | |
| sug (0.254582) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.571347) | |
| fbs (0.526039) | |
| pro (0.512033) | |
| ece (0.45861) | |
| tes (0.415628) | |
| aor (0.390549) | |
| ova (0.387397) | |
| che (0.272628) | |
| kid (0.259471) | |
| cbr (0.255951) | |
| sug (0.254582) | |
| mgm (0.180343) | |
| sin (0.174948) | |
| rec (0.17307) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| nco (0.161734) | |
| mga (0.160205) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| ski (0.146735) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| cty (0.10408) | |
| ldo (0.0970026) |