Ss1.1-rche20_e21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTATAAAATTCGCAAACTTGACAACGGTGGGTATTATATCACCACCCGGGCCCAGTTTGA AACACTTCAGCAGCTTGTACAGCATTACTCAGAGAATCTCTGCTGCCGCCTAGTCGTTCC CTGTCACAAAGGGATGCCAAGGCTTACCGATCTGTCTGTCAAAACCAAAGATGTCTGGGA AATCCCTCGAGAATCCCTGCAGTTGATCAAGAGACTGGGCAATGGGCAGTTTGGGGAAGT ATGGATGGGTACCTGGAACGGAAACACAAAAGTAGCCATAAAGACTCTCAAACCAGGCAC AATGTCCCCAGAATCATTCCTCGAGGAGGCACAGATCATGAAGAAGTTGAAGCATGACAA ACTGGTCCAGCTCTATGCCGTGGTATCAGAGGAACCCATCTACATCGTCACCGAGTACAT GAATAAAGGAAGCTTACTCGATTTCTTAAAGGATGGAGAAGGAAGAGCCCTGAAGTTACC AAACCTCGTGGACATGGCAGCACAGGTTGCTGCAGGAATGGCGTACATTGAGCGCATGAA TTATATCCACAGAGACCTTCGGTCGGCAAACATTCTCTCTGGGGCTTTGCTCATTTGCAA GATCGCCGACTTTTTTATTTCTGAGTGGTGTGAGATCCCCTTAAAGGCGGGGTTCGACTC TGCAAAGTTCCCCATTAAGTGGACAGCCCCCGAAGCAGCCCTGTACGGGAGGTTCACAAT CAAGTCTGATGTGTGGTCTTTTGGAATCTTACTCACAGAGCTGGTCACCAAAGGAAGAGT TCCGTACCCAGGCATGAACAACCGGGAGGTGCTGGAGCAGGTGGAGCGCGGCTACAGGAT GCCCTGTCCGCAGGACTGCCCCATCTCTCTCCACGAGCTCATGATCCACTGCTGGAAAAA GGACCCCGAAGAGAGGCCCACTTTCGAGTACTTGCAGGGCTTCCTGGAAGACTACTTCAC CGCGACAGAGCCCCAGTATCAACCCGGTGAAAACCTGTAAGACCCGGTCTGCAGAGCGAG GCCTTGTCCCAGAGGCTTCCCCGCCCCCTCCCCATTAGCTTTCAATTCCGTAGCCAGCTG CTCCGAGCAGAGCGGCGAGAACCGTCCAGGATCAGATTGCATGTGACTCTGAAGCTGACG AACTTCCATGGCCCTCATTAATGACACTTGTCCCCAAATCCGAACCTCCTCTGTGAAGCA TACGAGACAGAACCTTGTTATTTCTCAGACTTTGGAAAATGCATTGTATCGATGTTATGT AAAAGGCCAAACCTCTGTTCAGTGTAAATAGTTACTCCAGTGCCAACGATCCTAGTGCTT TCCTTTTTTTAAAATGCAAATCCTATGTGATTTTAACTCTGTCTTCACCTGATTCCACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTATAAAATTCGCAAACTTGACAACGGTGGGTATTATATCACCACCCGGGCCCAGTTTGA AACACTTCAGCAGCTTGTACAGCATTACTCAGAGAATCTCTGCTGCCGCCTAGTCGTTCC CTGTCACAAAGGGATGCCAAGGCTTACCGATCTGTCTGTCAAAACCAAAGATGTCTGGGA AATCCCTCGAGAATCCCTGCAGTTGATCAAGAGACTGGGCAATGGGCAGTTTGGGGAAGT ATGGATGGGTACCTGGAACGGAAACACAAAAGTAGCCATAAAGACTCTCAAACCAGGCAC AATGTCCCCAGAATCATTCCTCGAGGAGGCACAGATCATGAAGAAGTTGAAGCATGACAA ACTGGTCCAGCTCTATGCCGTGGTATCAGAGGAACCCATCTACATCGTCACCGAGTACAT GAATAAAGGAAGCTTACTCGATTTCTTAAAGGATGGAGAAGGAAGAGCCCTGAAGTTACC AAACCTCGTGGACATGGCAGCACAGGTTGCTGCAGGAATGGCGTACATTGAGCGCATGAA TTATATCCACAGAGACCTTCGGTCGGCAAACATTCTCTCTGGGGCTTTGCTCATTTGCAA GATCGCCGACTTTTTTATTTCTGAGTGGTGTGAGATCCCCTTAAAGGCGGGGTTCGACTC TGCAAAGTTCCCCATTAAGTGGACAGCCCCCGAAGCAGCCCTGTACGGGAGGTTCACAAT CAAGTCTGATGTGTGGTCTTTTGGAATCTTACTCACAGAGCTGGTCACCAAAGGAAGAGT TCCGTACCCAGGCATGAACAACCGGGAGGTGCTGGAGCAGGTGGAGCGCGGCTACAGGAT GCCCTGTCCGCAGGACTGCCCCATCTCTCTCCACGAGCTCATGATCCACTGCTGGAAAAA GGACCCCGAAGAGAGGCCCACTTTCGAGTACTTGCAGGGCTTCCTGGAAGACTACTTCAC CGCGACAGAGCCCCAGTATCAACCCGGTGAAAACCTGTAAGACCCGGTCTGCAGAGCGAG GCCTTGTCCCAGAGGCTTCCCCGCCCCCTCCCCATTAGCTTTCAATTCCGTAGCCAGCTG CTCCGAGCAGAGCGGCGAGAACCGTCCAGGATCAGATTGCATGTGACTCTGAAGCTGACG AACTTCCATGGCCCTCATTAATGACACTTGTCCCCAAATCCGAACCTCCTCTGTGAAGCA TACGAGACAGAACCTTGTTATTTCTCAGACTTTGGAAAATGCATTGTATCGATGTTATGT AAAAGGCCAAACCTCTGTTCAGTGTAAATAGTTACTCCAGTGCCAACGATCCTAGTGCTT TCCTTTTTTTAAAATGCAAATCCTATGTGATTTTAACTCTGTCTTCACCTGATTCCACTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 248-429, gnl|bosTau2|chr13 (49329154-49328973) | |
| 248-429, gnl|canFam2|chr24 (28985795-28986007) | |
| 248-429, gnl|danRer3|chr18 (19394224-19394034) | |
| 248-429, gnl|dasNov1|scaffold_170364 (573-751) | |
| 248-429, gnl|echTel1|scaffold_243420 (736-932) | |
| 248-429, gnl|fr1|chrUn (40133026-40133236) | |
| 248-429, gnl|galGal2|chr20 (4818193-4818411) | |
| 248-429, gnl|hg17|chr20 (35461925-35462145) | |
| 248-429, gnl|Hg17|chr20 (35461931-35462112) | |
| 248-429, gnl|loxAfr1|scaffold_120378 (4337-4136) | |
| 248-429, gnl|mm7|chr2 (157208314-157208534) | |
| 248-429, gnl|Mm7|chr2 (157208320-157208501) | |
| 248-429, gnl|monDom2|scaffold_6 (2186701-2186494) | |
| 248-429, gnl|oryCun1|scaffold_122381 (7993-8161) | |
| 248-429, gnl|panTro1|chr21 (37785035-37785255) | |
| 248-429, gnl|rheMac2|chr10 (27061934-27061724) | |
| 248-429, gnl|rn3|chr3 (148073541-148073741) | |
| 248-429, gnl|tetNig1|chr6 (4456982-4456784) | |
| 248-429, gnl|xenTro1|scaffold_637 (275058-275265) | |
| 503-612, gnl|bosTau2|chr9 (19838799-19838908) | |
| 503-612, gnl|canFam2|chr12 (71175579-71175726) | |
| 503-612, gnl|danRer3|chr20 (429062-429209) | |
| 503-612, gnl|dasNov1|scaffold_613 (44290-44143) | |
| 503-612, gnl|echTel1|scaffold_289012 (6914-7061) | |
| 503-612, gnl|fr1|chrUn (13068864-13069011) | |
| 503-612, gnl|galGal2|chr3 (64402206-64402059) | |
| 503-612, gnl|hg17|chr6 (112122266-112122413) | |
| 503-612, gnl|Hg17|chr6 (112122427-112122318) | |
| 503-612, gnl|loxAfr1|scaffold_3319 (46110-46253) | |
| 503-612, gnl|mm7|chr10 (39313768-39313621) | |
| 503-612, gnl|Mm7|chr10 (39313605-39313714) | |
| 503-612, gnl|monDom2|scaffold_0 (107990063-107989916) | |
| 503-612, gnl|oryCun1|scaffold_204157 (57342-57489) | |
| 503-612, gnl|panTro1|chr5 (114464053-114464203) | |
| 503-612, gnl|rheMac2|chr4 (152241796-152241649) | |
| 503-612, gnl|rn3|chr20 (43691272-43691125) | |
| 503-612, gnl|tetNig1|chr10 (8224160-8224014) | |
| 503-612, gnl|xenTro1|scaffold_174 (902365-902508) | |
| 789-1020, gnl|bosTau2|chr13 (49325955-49325725) | |
| 789-1020, gnl|Hg17|chr20 (35464985-35465212) | |
| 789-1020, gnl|Mm7|chr2 (157210640-157210867) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 248-429, gnl|bosTau2|chr13 (49329154-49328973) | |
| 248-429, gnl|canFam2|chr24 (28985795-28986007) | |
| 248-429, gnl|danRer3|chr18 (19394224-19394034) | |
| 248-429, gnl|dasNov1|scaffold_170364 (573-751) | |
| 248-429, gnl|echTel1|scaffold_243420 (736-932) | |
| 248-429, gnl|fr1|chrUn (40133026-40133236) | |
| 248-429, gnl|galGal2|chr20 (4818193-4818411) | |
| 248-429, gnl|hg17|chr20 (35461925-35462145) | |
| 248-429, gnl|Hg17|chr20 (35461931-35462112) | |
| 248-429, gnl|loxAfr1|scaffold_120378 (4337-4136) | |
| 248-429, gnl|mm7|chr2 (157208314-157208534) | |
| 248-429, gnl|Mm7|chr2 (157208320-157208501) | |
| 248-429, gnl|monDom2|scaffold_6 (2186701-2186494) | |
| 248-429, gnl|oryCun1|scaffold_122381 (7993-8161) | |
| 248-429, gnl|panTro1|chr21 (37785035-37785255) | |
| 248-429, gnl|rheMac2|chr10 (27061934-27061724) | |
| 248-429, gnl|rn3|chr3 (148073541-148073741) | |
| 248-429, gnl|tetNig1|chr6 (4456982-4456784) | |
| 248-429, gnl|xenTro1|scaffold_637 (275058-275265) | |
| 503-612, gnl|bosTau2|chr9 (19838799-19838908) | |
| 503-612, gnl|canFam2|chr12 (71175579-71175726) | |
| 503-612, gnl|danRer3|chr20 (429062-429209) | |
| 503-612, gnl|dasNov1|scaffold_613 (44290-44143) | |
| 503-612, gnl|echTel1|scaffold_289012 (6914-7061) | |
| 503-612, gnl|fr1|chrUn (13068864-13069011) | |
| 503-612, gnl|galGal2|chr3 (64402206-64402059) | |
| 503-612, gnl|hg17|chr6 (112122266-112122413) | |
| 503-612, gnl|Hg17|chr6 (112122427-112122318) | |
| 503-612, gnl|loxAfr1|scaffold_3319 (46110-46253) | |
| 503-612, gnl|mm7|chr10 (39313768-39313621) | |
| 503-612, gnl|Mm7|chr10 (39313605-39313714) | |
| 503-612, gnl|monDom2|scaffold_0 (107990063-107989916) | |
| 503-612, gnl|oryCun1|scaffold_204157 (57342-57489) | |
| 503-612, gnl|panTro1|chr5 (114464053-114464203) | |
| 503-612, gnl|rheMac2|chr4 (152241796-152241649) | |
| 503-612, gnl|rn3|chr20 (43691272-43691125) | |
| 503-612, gnl|tetNig1|chr10 (8224160-8224014) | |
| 503-612, gnl|xenTro1|scaffold_174 (902365-902508) | |
| 789-1020, gnl|bosTau2|chr13 (49325955-49325725) | |
| 789-1020, gnl|Hg17|chr20 (35464985-35465212) | |
| 789-1020, gnl|Mm7|chr2 (157210640-157210867) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| ece (0.45861) | |
| eep (0.367692) | |
| cbl (0.344392) | |
| cst (0.280073) | |
| cly (0.241284) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| ski (0.146735) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| cov (0.132153) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| jca (0.11396) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| eep (0.367692) | |
| cbl (0.344392) | |
| cst (0.280073) | |
| cly (0.241284) | |
| nep (0.183925) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| ski (0.146735) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| cov (0.132153) | |
| thg (0.126791) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| jca (0.11396) |