Non-Coding RNA Search

Ss1.1-rche20_g21.5

Sequence:


               
               GAGCAGGATAACGAAGTTGCCATCAGGTTGAAGGTCTGTCCTATCTGTCAGGTGCCCATC
CGCAAAAACCTGAGGTATGGAGCCAGCATCAAACAGCGGCTAGAAGAGATTGAAGTCGTC
AAGAAAAAGATCCAGGGCTCAGCAGGTGAAATAGCAATCAGCCAGGAACGACTTAAGGCC
CTACTAGAGAAGAAGAACCTCCTCTGCCAGCTGCTCCCTGAAGACTTTCTGATGTTGAAA
GAGAAGCTGGACCAGAAAAATCTGTCAGTGAAGGACCTGGGCCTTGTTGAGAATTATATC
AGCTTCTATGACCACTTGGCTAGCCTGTGGGATTCCCTGAAAAAAGTGCATGTCTTAGAA
CAAGAGAGAGTGAGCACTCGATTAAACCAAATTCATGATTGGCTAACCAAGAAGCGTTTG
AGCTTCACTAACCAGGAATTGGATGACCTCCAAAGTGAAATCCAGAGGCTCACATACCTG
GTAGACCTCCTGGCACGCTGCAAGACGGCAGGGGAGAATGTGAAAGGCAGCGTAGCAGGA
GAGGTCAACAGTGTCCGGAAGATCCTCGAGAGAACATGTAAGTTCACCCAGGAGGATGAA
CAGCTTGTGCAGAAAAAGATGGAAGCTCTGAAAGCCATCCTTCCCCGCTCTGGCCTGGGC
ATCTCAGAGGAAGAACGAGTGCAGATTGTCAGGGCCATGGGTTACCCTCAGGGCCACTGG
TTCAAGTGCCCCAATGGCCACATCTACGCGATTAGTGATTGCGGGGGAGCCATGCAGAGA
GCCAGATGTCCTGACTGTAGGGAAGTCATTGGGGGCGTAAATCATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCAGGATAACGAAGTTGCCATCAGGTTGAAGGTCTGTCCTATCTGTCAGGTGCCCATC
CGCAAAAACCTGAGGTATGGAGCCAGCATCAAACAGCGGCTAGAAGAGATTGAAGTCGTC
AAGAAAAAGATCCAGGGCTCAGCAGGTGAAATAGCAATCAGCCAGGAACGACTTAAGGCC
CTACTAGAGAAGAAGAACCTCCTCTGCCAGCTGCTCCCTGAAGACTTTCTGATGTTGAAA
GAGAAGCTGGACCAGAAAAATCTGTCAGTGAAGGACCTGGGCCTTGTTGAGAATTATATC
AGCTTCTATGACCACTTGGCTAGCCTGTGGGATTCCCTGAAAAAAGTGCATGTCTTAGAA
CAAGAGAGAGTGAGCACTCGATTAAACCAAATTCATGATTGGCTAACCAAGAAGCGTTTG
AGCTTCACTAACCAGGAATTGGATGACCTCCAAAGTGAAATCCAGAGGCTCACATACCTG
GTAGACCTCCTGGCACGCTGCAAGACGGCAGGGGAGAATGTGAAAGGCAGCGTAGCAGGA
GAGGTCAACAGTGTCCGGAAGATCCTCGAGAGAACATGTAAGTTCACCCAGGAGGATGAA
CAGCTTGTGCAGAAAAAGATGGAAGCTCTGAAAGCCATCCTTCCCCGCTCTGGCCTGGGC
ATCTCAGAGGAAGAACGAGTGCAGATTGTCAGGGCCATGGGTTACCCTCAGGGCCACTGG
TTCAAGTGCCCCAATGGCCACATCTACGCGATTAGTGATTGCGGGGGAGCCATGCAGAGA
GCCAGATGTCCTGACTGTAGGGAAGTCATTGGGGGCGTAAATCATACT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q29215_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q29215_PIG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               118-797, + strand, RNAz p=0.993973

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-797, + strand, RNAz p=0.993973

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-827, gnl|bosTau2|chr13 (57726151-57725325)
               

               
               1-827, gnl|Hg17|chr20 (47298152-47297323)
               

               
               1-827, gnl|Mm7|chr2 (166778317-166777491)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-827, gnl|bosTau2|chr13 (57726151-57725325)
               

               
               1-827, gnl|Hg17|chr20 (47298152-47297323)
               

               
               1-827, gnl|Mm7|chr2 (166778317-166777491)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               che (0.272628)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	1-827, gnl\|bosTau2\|chr13 (57726151-57725325)
	1-827, gnl\|Hg17\|chr20 (47298152-47297323)
	1-827, gnl\|Mm7\|chr2 (166778317-166777491)