Non-Coding RNA Search

Ss1.1-rche20_j20.5

Sequence:


               
               CGCTGGCGGAGAAGCAGCAGCGTCGTGGCTGATCTCGCACTGCACGCAGGATTTGCTTTC
TTCTTACGCTGGGCTGGGGGGCCCAGGACGGAGTTATCCGAGCAGGAGAAAACCTGCTTG
GGGTGAGCTCGGGCCGCCCCGGAAATGCGATGGCCGAGGAGCAGGCACTGAGGACCAGAC
CGAGATTGGGCTTCAAATCAAGACACTGCATTCTCCTAGAAAAGACAAAGAGTTTGTAAC
GGTGAACATGGTGTAATCTGCATTAACATCCCACACCATGAAGGCATGACAATTAAGGAA
CACATGTGGACTTGTGGCACATGGAAATGTGTGCACAGAAAAAAGAAATCTGTAATTCTT
TAAAAACAGGAAGGTGTTCTTCCTCACCAAAATGGGTACATTCTGCTCAGTCATCAGGTT
TGAAAATCTCCAAGAATTAAAGAGACTTTGTCACTGGGGTCCCATTATAGCCCTTGGTGT
TATAGCAATATGTTCTACCATGGCCATGATTGACTCTGTTTTGTGGTATTGGCCCTTACA
TACCACTGGAGGAAGCGTGAATTTCATCATGTTGATAAATTGGACTGTCATGATTCTTTA
TAATTATTTCAATGCCATGTTTGTTGGTCCTGGCTTCGTCCCTCTGGGGTGGAAACCGGA
AAATTCTCAGGATAGCATGTACCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCACC
ACGGTCACATCACTGCAGAAAGTGTAACAGATGTGTGATGAAGATGGACCATCACTGTCC
TTGGATCAACAACTGCTGTGGTTACCAAAATCATGCTTCGTTCACACTATTTCTCCTTCT
AGCACCACTGGGTTGTATTCATGCTGCCTTTATTTTTGTTATGACAATGTATACACAGCT
TTATAATCGGCTCTCCTTTGGGTGGAACACGGTCAAGATTGATATGAGTGCAGCCCGGAG
AGATCCTCTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCTGGCGGAGAAGCAGCAGCGTCGTGGCTGATCTCGCACTGCACGCAGGATTTGCTTTC
TTCTTACGCTGGGCTGGGGGGCCCAGGACGGAGTTATCCGAGCAGGAGAAAACCTGCTTG
GGGTGAGCTCGGGCCGCCCCGGAAATGCGATGGCCGAGGAGCAGGCACTGAGGACCAGAC
CGAGATTGGGCTTCAAATCAAGACACTGCATTCTCCTAGAAAAGACAAAGAGTTTGTAAC
GGTGAACATGGTGTAATCTGCATTAACATCCCACACCATGAAGGCATGACAATTAAGGAA
CACATGTGGACTTGTGGCACATGGAAATGTGTGCACAGAAAAAAGAAATCTGTAATTCTT
TAAAAACAGGAAGGTGTTCTTCCTCACCAAAATGGGTACATTCTGCTCAGTCATCAGGTT
TGAAAATCTCCAAGAATTAAAGAGACTTTGTCACTGGGGTCCCATTATAGCCCTTGGTGT
TATAGCAATATGTTCTACCATGGCCATGATTGACTCTGTTTTGTGGTATTGGCCCTTACA
TACCACTGGAGGAAGCGTGAATTTCATCATGTTGATAAATTGGACTGTCATGATTCTTTA
TAATTATTTCAATGCCATGTTTGTTGGTCCTGGCTTCGTCCCTCTGGGGTGGAAACCGGA
AAATTCTCAGGATAGCATGTACCTCCAGTATTGTAAAGTCTGCCAAGCATACAAGGCACC
ACGGTCACATCACTGCAGAAAGTGTAACAGATGTGTGATGAAGATGGACCATCACTGTCC
TTGGATCAACAACTGCTGTGGTTACCAAAATCATGCTTCGTTCACACTATTTCTCCTTCT
AGCACCACTGGGTTGTATTCATGCTGCCTTTATTTTTGTTATGACAATGTATACACAGCT
TTATAATCGGCTCTCCTTTGGGTGGAACACGGTCAAGATTGATATGAGTGCAGCCCGGAG
AGATCCTCTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55634537|ref|XP_508039.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55634537|ref|XP_508039.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               296-415, + strand, RNAz p=0.766328

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               296-415, + strand, RNAz p=0.766328

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               183-662, gnl|bosTau2|chr26 (21366075-21365601)
               

               
               183-662, gnl|Hg17|chr10 (114195400-114194914)
               

               
               183-662, gnl|Mm7|chr19 (55229008-55228531)
               


               
               749-910, gnl|bosTau2|chr26 (21363704-21363543)
               

               
               749-910, gnl|Hg17|chr10 (114192101-114191940)
               

               
               749-910, gnl|Mm7|chr19 (55226020-55225859)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-662, gnl|bosTau2|chr26 (21366075-21365601)
               

               
               183-662, gnl|Hg17|chr10 (114195400-114194914)
               

               
               183-662, gnl|Mm7|chr19 (55229008-55228531)
               


               
               749-910, gnl|bosTau2|chr26 (21363704-21363543)
               

               
               749-910, gnl|Hg17|chr10 (114192101-114191940)
               

               
               749-910, gnl|Mm7|chr19 (55226020-55225859)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               fbs (0.175346)
               

               
               che (0.136314)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               fbs (0.175346)
               

               
               che (0.136314)

	183-662, gnl\|bosTau2\|chr26 (21366075-21365601)
	183-662, gnl\|Hg17\|chr10 (114195400-114194914)
	183-662, gnl\|Mm7\|chr19 (55229008-55228531)

	749-910, gnl\|bosTau2\|chr26 (21363704-21363543)
	749-910, gnl\|Hg17\|chr10 (114192101-114191940)
	749-910, gnl\|Mm7\|chr19 (55226020-55225859)