Ss1.1-rche20_m18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTAACAGATTTTAGGTAACATTAAGTAACATTCTAAATTCCATACATGAAGGCAATCGTG CTCGGCCCACCACCGGCGCTGACCAGAAGCGCTGACCAGGACGGCTTGTGATTAACGGGG GTTTGTCTGGGGTGACGAACAAAGGTCATTCCCAGTTCACCGGCTCTCGCAGAGGCTGGG TCTCCACCGGGACAGTGCACCTGTCCCGAGAGTTCCGACAGGAACCAAGACAGGAGAACG CCCCCTGACCTCACGGCACAGTCAGCAGCTCCTTGTCTGATTTATTTTTGGAACTTCTTC CTCTTCAGAGCCTTCCACTCGCCCTCCTGTGTGGCCAGGCTGTTAAAAAGCTGCTTCACC TTCCGCTTTCTTTCCGCGTCCCGTTCCCGGATCTCGGCGAGCTGCATCCGGGCCAGGAAC TGGTTGTCCTTGCGGATCTCGCGGACGGCGCCCTTGAACTCTCGCTTGTGTTTGTGGATC AGTCTCCTCCGCTCCTGCTCCTCCCTGCTGCTCCCCTGCTTCCTCCCAAACTCCAGGACT CTGACCAGCCGGGGGGTGAACAGCTTCAGCGGCACGGGCTTGCTCTTCTCGCAGACCAGC GGCCGGCAGCGCGTCGGCTGCTTCTCCATGTCCGTCAGGACGCCTCGGGTCAGCTCCTGG ATCTCGAGGGGGCGGCTGCAGTCGGCCAGGTGTTGGGCGAGGAGGGCTTTCAGGGGCCTC ACGATGTCGTGGAAGGCTGGCAGCGCGCCGTACAGGAGCACACAGCGCTTCACCAGGGCC AGACACACGGCCAGGCAGGACAGTCTGGTGTGGTTGGCCTCCGTCCTCGTCTGCGCCTTC CAGCTCCCTGCCCAACGGAGCGAGAGGCTCCTCCTCTGCCACGTGGCCACGTCCTCTGCG TCGGAAACCCAGAGCAGCCCGGCGTTCTTCCCGAGGGCTCTGAACGGGGGCACCAGGCTG TAACCCTGGCCTGGCCTCCCTGGAGCTGCGATGTAAAGGATCCCAAGGAGGAAATTAAGC AGCTCAGGTATGAATCTCTGGGACAGGGACACGTAGTCCAGGAACAAGCAGCACACGAAG AGACCCTTCACCACGTCCGGGAGCGACAGCACCGGGCACTTGGTGAGCAGCTGGCTGAGA CACAGCAGCGCAGGAGTGACGACCGGGTGCCAGAAGTCAGAGGTCGGGAACAGCAGCCCA GCAACTTTCAGGTAAACGAGCACGTCCAGGCCGGGGAAGGCCGCCCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTAACAGATTTTAGGTAACATTAAGTAACATTCTAAATTCCATACATGAAGGCAATCGTG CTCGGCCCACCACCGGCGCTGACCAGAAGCGCTGACCAGGACGGCTTGTGATTAACGGGG GTTTGTCTGGGGTGACGAACAAAGGTCATTCCCAGTTCACCGGCTCTCGCAGAGGCTGGG TCTCCACCGGGACAGTGCACCTGTCCCGAGAGTTCCGACAGGAACCAAGACAGGAGAACG CCCCCTGACCTCACGGCACAGTCAGCAGCTCCTTGTCTGATTTATTTTTGGAACTTCTTC CTCTTCAGAGCCTTCCACTCGCCCTCCTGTGTGGCCAGGCTGTTAAAAAGCTGCTTCACC TTCCGCTTTCTTTCCGCGTCCCGTTCCCGGATCTCGGCGAGCTGCATCCGGGCCAGGAAC TGGTTGTCCTTGCGGATCTCGCGGACGGCGCCCTTGAACTCTCGCTTGTGTTTGTGGATC AGTCTCCTCCGCTCCTGCTCCTCCCTGCTGCTCCCCTGCTTCCTCCCAAACTCCAGGACT CTGACCAGCCGGGGGGTGAACAGCTTCAGCGGCACGGGCTTGCTCTTCTCGCAGACCAGC GGCCGGCAGCGCGTCGGCTGCTTCTCCATGTCCGTCAGGACGCCTCGGGTCAGCTCCTGG ATCTCGAGGGGGCGGCTGCAGTCGGCCAGGTGTTGGGCGAGGAGGGCTTTCAGGGGCCTC ACGATGTCGTGGAAGGCTGGCAGCGCGCCGTACAGGAGCACACAGCGCTTCACCAGGGCC AGACACACGGCCAGGCAGGACAGTCTGGTGTGGTTGGCCTCCGTCCTCGTCTGCGCCTTC CAGCTCCCTGCCCAACGGAGCGAGAGGCTCCTCCTCTGCCACGTGGCCACGTCCTCTGCG TCGGAAACCCAGAGCAGCCCGGCGTTCTTCCCGAGGGCTCTGAACGGGGGCACCAGGCTG TAACCCTGGCCTGGCCTCCCTGGAGCTGCGATGTAAAGGATCCCAAGGAGGAAATTAAGC AGCTCAGGTATGAATCTCTGGGACAGGGACACGTAGTCCAGGAACAAGCAGCACACGAAG AGACCCTTCACCACGTCCGGGAGCGACAGCACCGGGCACTTGGTGAGCAGCTGGCTGAGA CACAGCAGCGCAGGAGTGACGACCGGGTGCCAGAAGTCAGAGGTCGGGAACAGCAGCCCA GCAACTTTCAGGTAAACGAGCACGTCCAGGCCGGGGAAGGCCGCCCGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 374-537, gnl|bosTau2|chr6 (65354628-65354791) | |
| 374-537, gnl|Hg17|chr4 (2977912-2978075) | |
| 374-537, gnl|Mm7|chr5 (33701439-33701602) | |
| 538-687, gnl|bosTau2|chr6 (65354891-65355040) | |
| 538-687, gnl|Hg17|chr4 (2978259-2978380) | |
| 538-687, gnl|Mm7|chr5 (33701741-33701861) | |
| 805-965, gnl|bosTau2|chr6 (65356048-65356208) | |
| 805-965, gnl|Hg17|chr4 (2980924-2981084) | |
| 805-965, gnl|Mm7|chr5 (33703879-33704039) | |
| 1119-1221, gnl|bosTau2|chr6 (65357495-65357597) | |
| 1119-1221, gnl|canFam2|chr3 (64164484-64164366) | |
| 1119-1221, gnl|dasNov1|scaffold_111783 (3912-4030) | |
| 1119-1221, gnl|echTel1|scaffold_199298 (3291-3409) | |
| 1119-1221, gnl|fr1|chrUn (141213619-141213735) | |
| 1119-1221, gnl|galGal2|chr4 (82562291-82562173) | |
| 1119-1221, gnl|hg17|chr4 (2983855-2983973) | |
| 1119-1221, gnl|Hg17|chr4 (2983860-2983962) | |
| 1119-1221, gnl|loxAfr1|scaffold_112246 (718-836) | |
| 1119-1221, gnl|mm7|chr5 (33707264-33707382) | |
| 1119-1221, gnl|Mm7|chr5 (33707269-33707371) | |
| 1119-1221, gnl|monDom2|scaffold_10 (41163219-41163101) | |
| 1119-1221, gnl|oryCun1|scaffold_191563 (9805-9923) | |
| 1119-1221, gnl|panTro1|chr3 (3034737-3034855) | |
| 1119-1221, gnl|rheMac2|chr1 (1000329-1000211) | |
| 1119-1221, gnl|rn3|chr14 (81740820-81740702) | |
| 1119-1221, gnl|tetNig1|chr4 (4321894-4321784) | |
| 1119-1221, gnl|xenTro1|scaffold_458 (186083-186206) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 374-537, gnl|bosTau2|chr6 (65354628-65354791) | |
| 374-537, gnl|Hg17|chr4 (2977912-2978075) | |
| 374-537, gnl|Mm7|chr5 (33701439-33701602) | |
| 538-687, gnl|bosTau2|chr6 (65354891-65355040) | |
| 538-687, gnl|Hg17|chr4 (2978259-2978380) | |
| 538-687, gnl|Mm7|chr5 (33701741-33701861) | |
| 805-965, gnl|bosTau2|chr6 (65356048-65356208) | |
| 805-965, gnl|Hg17|chr4 (2980924-2981084) | |
| 805-965, gnl|Mm7|chr5 (33703879-33704039) | |
| 1119-1221, gnl|bosTau2|chr6 (65357495-65357597) | |
| 1119-1221, gnl|canFam2|chr3 (64164484-64164366) | |
| 1119-1221, gnl|dasNov1|scaffold_111783 (3912-4030) | |
| 1119-1221, gnl|echTel1|scaffold_199298 (3291-3409) | |
| 1119-1221, gnl|fr1|chrUn (141213619-141213735) | |
| 1119-1221, gnl|galGal2|chr4 (82562291-82562173) | |
| 1119-1221, gnl|hg17|chr4 (2983855-2983973) | |
| 1119-1221, gnl|Hg17|chr4 (2983860-2983962) | |
| 1119-1221, gnl|loxAfr1|scaffold_112246 (718-836) | |
| 1119-1221, gnl|mm7|chr5 (33707264-33707382) | |
| 1119-1221, gnl|Mm7|chr5 (33707269-33707371) | |
| 1119-1221, gnl|monDom2|scaffold_10 (41163219-41163101) | |
| 1119-1221, gnl|oryCun1|scaffold_191563 (9805-9923) | |
| 1119-1221, gnl|panTro1|chr3 (3034737-3034855) | |
| 1119-1221, gnl|rheMac2|chr1 (1000329-1000211) | |
| 1119-1221, gnl|rn3|chr14 (81740820-81740702) | |
| 1119-1221, gnl|tetNig1|chr4 (4321894-4321784) | |
| 1119-1221, gnl|xenTro1|scaffold_458 (186083-186206) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| hea (0.204499) | |
| fty (0.17584) | |
| ton (0.1755) | |
| che (0.136314) | |
| eru (0.120048) | |
| nbm (0.0993246) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| hea (0.204499) | |
| fty (0.17584) | |
| ton (0.1755) | |
| che (0.136314) | |
| eru (0.120048) | |
| nbm (0.0993246) |