Non-Coding RNA Search

Ss1.1-rche22_f19.5

Sequence:


               
               AACACTGTAGGGTCATTTCACCGCCTGGTTCCATGGCAGAGACATTTGCTTCCTCCACAA
CCTGTACAAACAGGGCAGAGTAGCCATCTCCCCAGTCACCCACCAAGCCACCAAAGATGC
TGTGTCCCAGAGCCTCCTGTAGTGGACTGAGAAGTCCTTGGCCTGAGCTGCGGCCATGGT
GGTAGAACGGAACAGGAAATAGCCAGCAGGGTGGGAGCCAGGGGAGGGACGAGAGTAAGT
GAGACATGGATTCTGCCTTTTTTGGAAAGGAAACCAAGCTCATACAGTCTTGGCTGAATT
ACAATCAGATTTTCCAGGGTCAAGCTTCCTTTCTGTGATACCTTCATCCTTGCGATGCTG
CGGTAGGAAGTAAACAGCAGTAGCGGCTCACTTGTATCATCCTTCCCATCGTCGGTAACA
CAGCCTGTTTGTAATCTCGGTCAAGGAGAAAATATTCACTCTGAGTTAGGCTGGAGGCAT
GATGTGATGGGGTCCACAGGGAGCTTGGTGCTGGGCCCCCCGTTCCTGCCGAGTCCTCTC
TGTCTTCCACAGCTGCACCCCAGAGTTCATTTCCCATCTCCCTGGGCTCCCTGGCACATC
TGCTTCCCCAGCGCTGTGAGTTTCTACCAGCATTGTCCTTAGCACTTGGTGGTTTGGGAG
CTGAAAATATGTTTTAAACTGTAACATAAACATCTCGGCCTGTTGCCTCTCATCCCTCTC
TATCACTGTGGCTCTTTAAAATCGTGTTATTTTGACTCAGGTCAAACAAAACAAAACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACACTGTAGGGTCATTTCACCGCCTGGTTCCATGGCAGAGACATTTGCTTCCTCCACAA
CCTGTACAAACAGGGCAGAGTAGCCATCTCCCCAGTCACCCACCAAGCCACCAAAGATGC
TGTGTCCCAGAGCCTCCTGTAGTGGACTGAGAAGTCCTTGGCCTGAGCTGCGGCCATGGT
GGTAGAACGGAACAGGAAATAGCCAGCAGGGTGGGAGCCAGGGGAGGGACGAGAGTAAGT
GAGACATGGATTCTGCCTTTTTTGGAAAGGAAACCAAGCTCATACAGTCTTGGCTGAATT
ACAATCAGATTTTCCAGGGTCAAGCTTCCTTTCTGTGATACCTTCATCCTTGCGATGCTG
CGGTAGGAAGTAAACAGCAGTAGCGGCTCACTTGTATCATCCTTCCCATCGTCGGTAACA
CAGCCTGTTTGTAATCTCGGTCAAGGAGAAAATATTCACTCTGAGTTAGGCTGGAGGCAT
GATGTGATGGGGTCCACAGGGAGCTTGGTGCTGGGCCCCCCGTTCCTGCCGAGTCCTCTC
TGTCTTCCACAGCTGCACCCCAGAGTTCATTTCCCATCTCCCTGGGCTCCCTGGCACATC
TGCTTCCCCAGCGCTGTGAGTTTCTACCAGCATTGTCCTTAGCACTTGGTGGTTTGGGAG
CTGAAAATATGTTTTAAACTGTAACATAAACATCTCGGCCTGTTGCCTCTCATCCCTCTC
TATCACTGTGGCTCTTTAAAATCGTGTTATTTTGACTCAGGTCAAACAAAACAAAACAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               117-237, - strand, RNAz p=0.939686
               

               
               421-524, - strand, RNAz p=0.62158
               

               
               518-636, - strand, RNAz p=0.590583

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-237, - strand, RNAz p=0.939686
               

               
               421-524, - strand, RNAz p=0.62158
               

               
               518-636, - strand, RNAz p=0.590583

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-772, gnl|bosTau2|chr23 (9021698-9022462)
               

               
               1-772, gnl|canFam2|chr12 (7085534-7086072)
               

               
               1-772, gnl|dasNov1|scaffold_16377 (40524-39990)
               

               
               1-772, gnl|echTel1|scaffold_278572 (91933-91428)
               

               
               1-772, gnl|hg17|chr6 (34948428-34948991)
               

               
               1-772, gnl|Hg17|chr6 (34948491-34949281)
               

               
               1-772, gnl|loxAfr1|scaffold_5390 (50542-51086)
               

               
               1-772, gnl|mm7|chr17 (26081812-26082334)
               

               
               1-772, gnl|Mm7|chr17 (26081873-26082858)
               

               
               1-772, gnl|monDom2|scaffold_42 (12381827-12381246)
               

               
               1-772, gnl|panTro1|chr5 (35402165-35402728)
               

               
               1-772, gnl|rheMac2|chr4 (34595047-34595610)
               

               
               1-772, gnl|rn3|chr20 (6108896-6109387)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-772, gnl|bosTau2|chr23 (9021698-9022462)
               

               
               1-772, gnl|canFam2|chr12 (7085534-7086072)
               

               
               1-772, gnl|dasNov1|scaffold_16377 (40524-39990)
               

               
               1-772, gnl|echTel1|scaffold_278572 (91933-91428)
               

               
               1-772, gnl|hg17|chr6 (34948428-34948991)
               

               
               1-772, gnl|Hg17|chr6 (34948491-34949281)
               

               
               1-772, gnl|loxAfr1|scaffold_5390 (50542-51086)
               

               
               1-772, gnl|mm7|chr17 (26081812-26082334)
               

               
               1-772, gnl|Mm7|chr17 (26081873-26082858)
               

               
               1-772, gnl|monDom2|scaffold_42 (12381827-12381246)
               

               
               1-772, gnl|panTro1|chr5 (35402165-35402728)
               

               
               1-772, gnl|rheMac2|chr4 (34595047-34595610)
               

               
               1-772, gnl|rn3|chr20 (6108896-6109387)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               che (0.136314)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	117-237, - strand, RNAz p=0.939686
	421-524, - strand, RNAz p=0.62158
	518-636, - strand, RNAz p=0.590583

	1-772, gnl\|bosTau2\|chr23 (9021698-9022462)
	1-772, gnl\|canFam2\|chr12 (7085534-7086072)
	1-772, gnl\|dasNov1\|scaffold_16377 (40524-39990)
	1-772, gnl\|echTel1\|scaffold_278572 (91933-91428)
	1-772, gnl\|hg17\|chr6 (34948428-34948991)
	1-772, gnl\|Hg17\|chr6 (34948491-34949281)
	1-772, gnl\|loxAfr1\|scaffold_5390 (50542-51086)
	1-772, gnl\|mm7\|chr17 (26081812-26082334)
	1-772, gnl\|Mm7\|chr17 (26081873-26082858)
	1-772, gnl\|monDom2\|scaffold_42 (12381827-12381246)
	1-772, gnl\|panTro1\|chr5 (35402165-35402728)
	1-772, gnl\|rheMac2\|chr4 (34595047-34595610)
	1-772, gnl\|rn3\|chr20 (6108896-6109387)