Non-Coding RNA Search

Ss1.1-rche22_g14.5

Sequence:


               
               CGGAGCCAGCGCCGGTGAGGACCATGTTGCTTCCGAACATCCTGCTCACCGGTACACCAG
GGTTGGAAAAACCACACTCGGCAAAGAACTTGCATCAAGATCAGGATTGAAATACATTAA
TGTGGGTGATTTAGCTCGAGAAGGGCAGCTTTATGACGGCTATGATGAAGAGTATGACTG
TCCTATTTTAGATGAAGATAGAGTTGTTGATGAGTTAGAAAACCAAATGAGTGAAGGTGG
AGTTATTGTTGATTACCATGGTTGTGATTTTTTCCCTGAACGTTGGTTTCATATAGTTTT
TGTGCTGAAAACAGATAACAGTGTTTTGTACAAAAGACTTGAAACAAGGGGTTATAACGA
GAAGAAACTAAAAGACAATATTCAGTGTGAAATTTTTCAAGTTCTCTATGAAGAAGCCTT
AGCATCCTACAAGGAAGAAATAGTGCATCAGCTACCAAGTGATAAACCAGAAGATCTGGA
GGATAATATTAATCAGATATTGAAATGGATTGAGCAGTGGGTCAAAGATCATGGCTCTTG
ACTTACAAGAATGGACACTTATACTCACTCTTGATATCTTCCCTATCCTATAAATTGTTC
AGTTATCAGTAGAACTTTTGCATTGAAATTGTGGATAGTTAAAAGTTTATGTTTGGGGTT
TTTTTCCTCCATGAGAAAGCTAAACAATTTCAAGTATAGTGAATAATAATAATATTATTA
AGGATTAGGAGTTAAAACTATCATTGTTTAATGCTTCAGTTGCTAAAGAATAAATAAATC
TGACCAAATGGGTTGCTATCTTTTAAGTTTATCATGGAAGAAAATGAAGATGATCTCTTA
AAATAAAACTTAAAATTATCCGTTTTCCATTTTTATGTTTTTAATTTAAAAGAAAATGGA
AGTGATTAATACTGGCACTCTGTATAAAATTCAAAAGGAACAGGAGTTCCAGTCGTGGCG
CAGTGGTTAACGAATCTGACTAGGAACCATGAGGTTTCGGGTTCCAGCCCTGATCCCTGG
CCTTGTTCAGTGGGTTAAGAAAAAAAAATTGCCGTGAGCTGTGGTGTAGGTCACCTGATT
AGACCCCTAGCCTGGGAACCTCCATAGGCCACAGGAGTGGCCCCAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGCCAGCGCCGGTGAGGACCATGTTGCTTCCGAACATCCTGCTCACCGGTACACCAG
GGTTGGAAAAACCACACTCGGCAAAGAACTTGCATCAAGATCAGGATTGAAATACATTAA
TGTGGGTGATTTAGCTCGAGAAGGGCAGCTTTATGACGGCTATGATGAAGAGTATGACTG
TCCTATTTTAGATGAAGATAGAGTTGTTGATGAGTTAGAAAACCAAATGAGTGAAGGTGG
AGTTATTGTTGATTACCATGGTTGTGATTTTTTCCCTGAACGTTGGTTTCATATAGTTTT
TGTGCTGAAAACAGATAACAGTGTTTTGTACAAAAGACTTGAAACAAGGGGTTATAACGA
GAAGAAACTAAAAGACAATATTCAGTGTGAAATTTTTCAAGTTCTCTATGAAGAAGCCTT
AGCATCCTACAAGGAAGAAATAGTGCATCAGCTACCAAGTGATAAACCAGAAGATCTGGA
GGATAATATTAATCAGATATTGAAATGGATTGAGCAGTGGGTCAAAGATCATGGCTCTTG
ACTTACAAGAATGGACACTTATACTCACTCTTGATATCTTCCCTATCCTATAAATTGTTC
AGTTATCAGTAGAACTTTTGCATTGAAATTGTGGATAGTTAAAAGTTTATGTTTGGGGTT
TTTTTCCTCCATGAGAAAGCTAAACAATTTCAAGTATAGTGAATAATAATAATATTATTA
AGGATTAGGAGTTAAAACTATCATTGTTTAATGCTTCAGTTGCTAAAGAATAAATAAATC
TGACCAAATGGGTTGCTATCTTTTAAGTTTATCATGGAAGAAAATGAAGATGATCTCTTA
AAATAAAACTTAAAATTATCCGTTTTCCATTTTTATGTTTTTAATTTAAAAGAAAATGGA
AGTGATTAATACTGGCACTCTGTATAAAATTCAAAAGGAACAGGAGTTCCAGTCGTGGCG
CAGTGGTTAACGAATCTGACTAGGAACCATGAGGTTTCGGGTTCCAGCCCTGATCCCTGG
CCTTGTTCAGTGGGTTAAGAAAAAAAAATTGCCGTGAGCTGTGGTGTAGGTCACCTGATT
AGACCCCTAGCCTGGGAACCTCCATAGGCCACAGGAGTGGCCCCAGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57042897|ref|XP_535264.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57042897|ref|XP_535264.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-143, gnl|bosTau2|chr15 (48311978-48311836)
               

               
               1-143, gnl|Hg17|chr5 (68701095-68698086)
               

               
               1-143, gnl|Mm7|chr6 (115664917-115664791)
               


               
               144-775, gnl|bosTau2|chr14 (11533036-11533684)
               

               
               144-775, gnl|Hg17|chr8 (6319168-6318562)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-143, gnl|bosTau2|chr15 (48311978-48311836)
               

               
               1-143, gnl|Hg17|chr5 (68701095-68698086)
               

               
               1-143, gnl|Mm7|chr6 (115664917-115664791)
               


               
               144-775, gnl|bosTau2|chr14 (11533036-11533684)
               

               
               144-775, gnl|Hg17|chr8 (6319168-6318562)

Expressed library(ies): 26 entry(ies)

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Expressed library(ies): 26 entry(ies)

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               isp (0.601504)
               

               
               bfe (0.449573)
               

               
               liv (0.438853)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 26 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.601504)
               

               
               bfe (0.449573)
               

               
               liv (0.438853)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               fat (0.294855)
               

               
               ste (0.270416)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	1-143, gnl\|bosTau2\|chr15 (48311978-48311836)
	1-143, gnl\|Hg17\|chr5 (68701095-68698086)
	1-143, gnl\|Mm7\|chr6 (115664917-115664791)

	144-775, gnl\|bosTau2\|chr14 (11533036-11533684)
	144-775, gnl\|Hg17\|chr8 (6319168-6318562)

	isp (0.601504)
	bfe (0.449573)
	liv (0.438853)
	fco (0.314416)
	sme (0.305437)
	fat (0.294855)
	ste (0.270416)
	ret (0.257467)
	thg (0.253582)
	cbe (0.239234)
	mgp (0.230681)
	ece (0.229305)
	aor (0.195274)
	ldo (0.194005)
	cmu (0.186393)
	sin (0.174948)
	tbr (0.154178)
	lun (0.150489)
	csk (0.140746)
	che (0.136314)
	pla (0.133672)
	nmm (0.132802)
	ese (0.126502)
	tra (0.123092)
	pgl (0.118483)
	spc (0.113366)