Non-Coding RNA Search

Ss1.1-rche22_k12.5

Sequence:


               
               GCGTCAAGGGCTCCCGAAGGGGCTGCGGGCTGAGGGTCCCGAACACGGCAGCGTTGGCCG
AAGTGTCTACGCCAACGGCTTCCTTGGGCGTAAGAAAACCGTTTTTCCCAAATGACATAG
CGTTCCAGGGCGAAAGCTCGCCACCAAGCCTGGGCGTCCCACGTGGCGACCTGCGCGCTT
CGGAGGGTTATGGAGGCGACGCTGCAGACACATGTTCTTGACTGTTTAGTTTGAAAGTTT
ACATTTTTTTATGCTTTGTGTTGGTGTGTAATTTTTTGTACTATTGGTGGCTAGTTTTTG
TCTAAAATCTTTTTTGAAATACTGCTTAAATGTTTTGATTTTATGATAGTGAAGCTTGTA
TTCAGTGTTTTGCCAATTGATATTATATGCTTGTAATAAAAGCAAAAGGAAAACCGAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTCAAGGGCTCCCGAAGGGGCTGCGGGCTGAGGGTCCCGAACACGGCAGCGTTGGCCG
AAGTGTCTACGCCAACGGCTTCCTTGGGCGTAAGAAAACCGTTTTTCCCAAATGACATAG
CGTTCCAGGGCGAAAGCTCGCCACCAAGCCTGGGCGTCCCACGTGGCGACCTGCGCGCTT
CGGAGGGTTATGGAGGCGACGCTGCAGACACATGTTCTTGACTGTTTAGTTTGAAAGTTT
ACATTTTTTTATGCTTTGTGTTGGTGTGTAATTTTTTGTACTATTGGTGGCTAGTTTTTG
TCTAAAATCTTTTTTGAAATACTGCTTAAATGTTTTGATTTTATGATAGTGAAGCTTGTA
TTCAGTGTTTTGCCAATTGATATTATATGCTTGTAATAAAAGCAAAAGGAAAACCGAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               31-415, gnl|bosTau2|chr6 (63929626-63930011)
               

               
               31-415, gnl|Hg17|chr4 (753318-753704)
               

               
               31-415, gnl|Mm7|chr5 (107684896-107685277)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-415, gnl|bosTau2|chr6 (63929626-63930011)
               

               
               31-415, gnl|Hg17|chr4 (753318-753704)
               

               
               31-415, gnl|Mm7|chr5 (107684896-107685277)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               cje (0.330469)
               

               
               cte (0.29274)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               ese (0.126502)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               cte (0.29274)
               

               
               gul (0.177588)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               ese (0.126502)

	31-415, gnl\|bosTau2\|chr6 (63929626-63930011)
	31-415, gnl\|Hg17\|chr4 (753318-753704)
	31-415, gnl\|Mm7\|chr5 (107684896-107685277)

	cje (0.330469)
	cte (0.29274)
	gul (0.177588)
	cut (0.169924)
	cki (0.165235)
	che (0.136314)
	ese (0.126502)