Ss1.1-rche26_i10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCATCTCTGTCACCAGCCGCTGCCACCCATCAGTCACAAATCTATGGGCGTTCCCAGAC TGTGGCCATGCATGGTCCTGCACGGACTTTAACGATGCAGAGAGGCATGAACATGAGTGT GAACCTGATGCCCTCCCCAGCCTACAACGTCAACTCCGTGAACATGAACATGAACACTCT CAACGCCATGAATGGGTACAGCATGTCCCAGCCGATGATGAACAGTGGCTACCACAGCAA TCATGGCTACATGAATCAAACGCCCCAGTACCCTATGCAGATGCAGATGGGCATGATGGG AACCCAGCCATACGCCCAGCAGCCAATGCAGACCCCGCCCCACAGTAACATGATGTACAC GGCCCCCGGACATCACGGCTACATGAACACGGGCATGTCCAAACAGTCTCTCAACGGGTC CTACATGAGAAGATAGGCACCGCGGGCAGTCACAATACCCCTGGGCATCACTCTCGGATT GATCTGCACAAATACCTTCGAAGAGTACGATTTCAAAACCAGCAATTGGTGTGAATGCAA AAACATTTGTTGGCACCATTTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCATCTCTGTCACCAGCCGCTGCCACCCATCAGTCACAAATCTATGGGCGTTCCCAGAC TGTGGCCATGCATGGTCCTGCACGGACTTTAACGATGCAGAGAGGCATGAACATGAGTGT GAACCTGATGCCCTCCCCAGCCTACAACGTCAACTCCGTGAACATGAACATGAACACTCT CAACGCCATGAATGGGTACAGCATGTCCCAGCCGATGATGAACAGTGGCTACCACAGCAA TCATGGCTACATGAATCAAACGCCCCAGTACCCTATGCAGATGCAGATGGGCATGATGGG AACCCAGCCATACGCCCAGCAGCCAATGCAGACCCCGCCCCACAGTAACATGATGTACAC GGCCCCCGGACATCACGGCTACATGAACACGGGCATGTCCAAACAGTCTCTCAACGGGTC CTACATGAGAAGATAGGCACCGCGGGCAGTCACAATACCCCTGGGCATCACTCTCGGATT GATCTGCACAAATACCTTCGAAGAGTACGATTTCAAAACCAGCAATTGGTGTGAATGCAA AAACATTTGTTGGCACCATTTATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 2-120, - strand, RNAz p=0.521552 | |
| 261-380, - strand, RNAz p=0.813307 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-120, - strand, RNAz p=0.521552 | |
| 261-380, - strand, RNAz p=0.813307 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 2-582, gnl|bosTau2|chr28 (24097623-24097044) | |
| 2-582, gnl|canFam2|chr4 (28511890-28512367) | |
| 2-582, gnl|danRer3|chr13 (27909597-27909117) | |
| 2-582, gnl|dasNov1|scaffold_2475 (68036-68497) | |
| 2-582, gnl|echTel1|scaffold_311458 (45991-46468) | |
| 2-582, gnl|fr1|chrUn (62752899-62752460) | |
| 2-582, gnl|galGal2|chr6 (14239679-14239205) | |
| 2-582, gnl|hg17|chr10 (76460351-76460829) | |
| 2-582, gnl|Hg17|chr10 (76460376-76460954) | |
| 2-582, gnl|loxAfr1|scaffold_8177 (75095-75576) | |
| 2-582, gnl|mm7|chr14 (19329087-19329564) | |
| 2-582, gnl|Mm7|chr14 (19329112-19329687) | |
| 2-582, gnl|monDom2|scaffold_14 (3097248-3097740) | |
| 2-582, gnl|oryCun1|scaffold_192802 (6966-7444) | |
| 2-582, gnl|panTro1|chr8 (77718160-77718638) | |
| 2-582, gnl|rheMac2|chr9 (61977199-61976721) | |
| 2-582, gnl|rn3|chr16 (73557250-73556782) | |
| 2-582, gnl|tetNig1|chr12 (11291087-11291539) | |
| 2-582, gnl|xenTro1|scaffold_106 (495193-495639) | |
| 62-439, gnl|bosTau2|chr27 (23300400-23300026) | |
| 62-439, gnl|canFam2|chr16 (26668474-26668150) | |
| 62-439, gnl|danRer3|chr9 (26153895-26154196) | |
| 62-439, gnl|dasNov1|scaffold_2475 (68504-68180) | |
| 62-439, gnl|echTel1|scaffold_298167 (7702-8026) | |
| 62-439, gnl|fr1|chrUn (62752462-62752764) | |
| 62-439, gnl|galGal2|chrUn (848176-848500) | |
| 62-439, gnl|hg17|chr8 (41908870-41909194) | |
| 62-439, gnl|Hg17|chr8 (41909251-41908877) | |
| 62-439, gnl|loxAfr1|scaffold_2557 (73637-73312) | |
| 62-439, gnl|mm7|chr8 (21725971-21725647) | |
| 62-439, gnl|Mm7|chr8 (21725588-21725962) | |
| 62-439, gnl|monDom2|scaffold_1 (80154735-80154411) | |
| 62-439, gnl|oryCun1|scaffold_192802 (7437-7110) | |
| 62-439, gnl|panTro1|chr7 (43326437-43326761) | |
| 62-439, gnl|rheMac2|chr8 (42513508-42513832) | |
| 62-439, gnl|rn3|chr16 (73556782-73557106) | |
| 62-439, gnl|tetNig1|chr12 (11291523-11291225) | |
| 62-439, gnl|xenTro1|scaffold_106 (495649-495334) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-582, gnl|bosTau2|chr28 (24097623-24097044) | |
| 2-582, gnl|canFam2|chr4 (28511890-28512367) | |
| 2-582, gnl|danRer3|chr13 (27909597-27909117) | |
| 2-582, gnl|dasNov1|scaffold_2475 (68036-68497) | |
| 2-582, gnl|echTel1|scaffold_311458 (45991-46468) | |
| 2-582, gnl|fr1|chrUn (62752899-62752460) | |
| 2-582, gnl|galGal2|chr6 (14239679-14239205) | |
| 2-582, gnl|hg17|chr10 (76460351-76460829) | |
| 2-582, gnl|Hg17|chr10 (76460376-76460954) | |
| 2-582, gnl|loxAfr1|scaffold_8177 (75095-75576) | |
| 2-582, gnl|mm7|chr14 (19329087-19329564) | |
| 2-582, gnl|Mm7|chr14 (19329112-19329687) | |
| 2-582, gnl|monDom2|scaffold_14 (3097248-3097740) | |
| 2-582, gnl|oryCun1|scaffold_192802 (6966-7444) | |
| 2-582, gnl|panTro1|chr8 (77718160-77718638) | |
| 2-582, gnl|rheMac2|chr9 (61977199-61976721) | |
| 2-582, gnl|rn3|chr16 (73557250-73556782) | |
| 2-582, gnl|tetNig1|chr12 (11291087-11291539) | |
| 2-582, gnl|xenTro1|scaffold_106 (495193-495639) | |
| 62-439, gnl|bosTau2|chr27 (23300400-23300026) | |
| 62-439, gnl|canFam2|chr16 (26668474-26668150) | |
| 62-439, gnl|danRer3|chr9 (26153895-26154196) | |
| 62-439, gnl|dasNov1|scaffold_2475 (68504-68180) | |
| 62-439, gnl|echTel1|scaffold_298167 (7702-8026) | |
| 62-439, gnl|fr1|chrUn (62752462-62752764) | |
| 62-439, gnl|galGal2|chrUn (848176-848500) | |
| 62-439, gnl|hg17|chr8 (41908870-41909194) | |
| 62-439, gnl|Hg17|chr8 (41909251-41908877) | |
| 62-439, gnl|loxAfr1|scaffold_2557 (73637-73312) | |
| 62-439, gnl|mm7|chr8 (21725971-21725647) | |
| 62-439, gnl|Mm7|chr8 (21725588-21725962) | |
| 62-439, gnl|monDom2|scaffold_1 (80154735-80154411) | |
| 62-439, gnl|oryCun1|scaffold_192802 (7437-7110) | |
| 62-439, gnl|panTro1|chr7 (43326437-43326761) | |
| 62-439, gnl|rheMac2|chr8 (42513508-42513832) | |
| 62-439, gnl|rn3|chr16 (73556782-73557106) | |
| 62-439, gnl|tetNig1|chr12 (11291523-11291225) | |
| 62-439, gnl|xenTro1|scaffold_106 (495649-495334) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) |