Ss1.1-rche26_k12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATCCCAGGCAAATGACTTCCCTGTGCCTTCGCCCAATGCTCGGCTACCATTTCCTTCCG TCTCGGCCTCGCTTGGTGTTTAACCGCGCGCGCACCACAAGGCCGGGGGCTGAGGCGGCC GGGCTCTCCGGGCCAGCCTCGCCCCTGGACCCCGCCCCGCCGGGAGTTCTGCAGCTCCCG CTGTCCAGCACCACGTTCTCCCCTGCCATGCCCTGCTCTCAAGAGACACAAGTCATCTCC CCCAGCAAGCGGGCCCGGCCTGCGGAGGAAAGCCGCAAGCGACTCCGCTTTGCCCGGCTC TCAGAGCACGCCACTGCCCCAACCAAAGGGTCTGAGCGCGCCGCGGGATATGACCTGTAC AGTGCCTACGATTACACAGTACTGCCGATGGAGAAAGCCATTGTGAAAACCGACATTCAG ATAGCTCTTCCTTCTGGGTGCTATGGGCGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAA CACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTT GTACTATTTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAATCGCACAG CTCATTTGTGAACGGATTTTTTACCCAGAAATAGAGGAAGTTCAAGTTTTGGATGACACC GAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAACGAATTAAAATTTACGCCAAGAACAG AAAATGAGAAAATGTACTTTTTCCTTTAAAATAAAAACTTTGCTTCAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATCCCAGGCAAATGACTTCCCTGTGCCTTCGCCCAATGCTCGGCTACCATTTCCTTCCG TCTCGGCCTCGCTTGGTGTTTAACCGCGCGCGCACCACAAGGCCGGGGGCTGAGGCGGCC GGGCTCTCCGGGCCAGCCTCGCCCCTGGACCCCGCCCCGCCGGGAGTTCTGCAGCTCCCG CTGTCCAGCACCACGTTCTCCCCTGCCATGCCCTGCTCTCAAGAGACACAAGTCATCTCC CCCAGCAAGCGGGCCCGGCCTGCGGAGGAAAGCCGCAAGCGACTCCGCTTTGCCCGGCTC TCAGAGCACGCCACTGCCCCAACCAAAGGGTCTGAGCGCGCCGCGGGATATGACCTGTAC AGTGCCTACGATTACACAGTACTGCCGATGGAGAAAGCCATTGTGAAAACCGACATTCAG ATAGCTCTTCCTTCTGGGTGCTATGGGCGAGTAGCTCCACGTTCTGGCTTGGCTGCAAAA CACTTCATAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATGTTGGTGTT GTACTATTTAATTTTGGCAAAGAAAAGTTTGAAGTCAAAAAGGGTGATCGAATCGCACAG CTCATTTGTGAACGGATTTTTTACCCAGAAATAGAGGAAGTTCAAGTTTTGGATGACACC GAAAGGGGTTCAGGAGGTTTTGGTTCCACTGGAACGAATTAAAATTTACGCCAAGAACAG AAAATGAGAAAATGTACTTTTTCCTTTAAAATAAAAACTTTGCTTCAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-180, gnl|bosTau2|chr10 (42841538-42841359) | |
| 1-180, gnl|Hg17|chr15 (46410991-46411160) | |
| 191-362, gnl|bosTau2|chr10 (42840802-42840631) | |
| 191-362, gnl|canFam2|chr30 (17563548-17563651) | |
| 191-362, gnl|dasNov1|scaffold_10957 (3733-3837) | |
| 191-362, gnl|echTel1|scaffold_210700 (868-760) | |
| 191-362, gnl|Hg17|chr15 (46411723-46411895) | |
| 191-362, gnl|hg17|chrX (148604465-148604575) | |
| 191-362, gnl|loxAfr1|scaffold_22478 (13915-13798) | |
| 191-362, gnl|mm7|chr2 (124988578-124988683) | |
| 191-362, gnl|Mm7|chr2 (124988587-124988749) | |
| 191-362, gnl|monDom2|scaffold_31 (27137625-27137740) | |
| 191-362, gnl|oryCun1|scaffold_197411 (826-729) | |
| 191-362, gnl|panTro1|chrX (153845697-153845807) | |
| 191-362, gnl|rheMac2|chrX (147690757-147690643) | |
| 191-362, gnl|rn3|chr13 (70572228-70572133) | |
| 557-780, gnl|bosTau2|chr15 (5029355-5029132) | |
| 557-780, gnl|Hg17|chrX (148604823-148605032) | |
| 641-768, gnl|bosTau2|chr10 (42830652-42830527) | |
| 641-768, gnl|canFam2|chr17 (38519764-38519648) | |
| 641-768, gnl|canFam2|chr30 (17575159-17575243) | |
| 641-768, gnl|dasNov1|scaffold_10957 (4185-4258) | |
| 641-768, gnl|dasNov1|scaffold_269187 (1043-944) | |
| 641-768, gnl|echTel1|scaffold_210700 (410-327) | |
| 641-768, gnl|hg17|chr1 (199040210-199040328) | |
| 641-768, gnl|Hg17|chr15 (46421506-46421639) | |
| 641-768, gnl|hg17|chrX (148604907-148604991) | |
| 641-768, gnl|mm7|chr2 (158147452-158147394) | |
| 641-768, gnl|monDom2|scaffold_31 (27138089-27138165) | |
| 641-768, gnl|oryCun1|scaffold_146350 (3894-3755) | |
| 641-768, gnl|oryCun1|scaffold_214549 (45908-45990) | |
| 641-768, gnl|panTro1|chr1 (181835765-181835883) | |
| 641-768, gnl|panTro1|chrX (153846139-153846223) | |
| 641-768, gnl|rheMac2|chr1 (168160857-168160739) | |
| 641-768, gnl|rheMac2|chrX (147690313-147690228) | |
| 641-768, gnl|rn3|chr1 (42829555-42829491) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-180, gnl|bosTau2|chr10 (42841538-42841359) | |
| 1-180, gnl|Hg17|chr15 (46410991-46411160) | |
| 191-362, gnl|bosTau2|chr10 (42840802-42840631) | |
| 191-362, gnl|canFam2|chr30 (17563548-17563651) | |
| 191-362, gnl|dasNov1|scaffold_10957 (3733-3837) | |
| 191-362, gnl|echTel1|scaffold_210700 (868-760) | |
| 191-362, gnl|Hg17|chr15 (46411723-46411895) | |
| 191-362, gnl|hg17|chrX (148604465-148604575) | |
| 191-362, gnl|loxAfr1|scaffold_22478 (13915-13798) | |
| 191-362, gnl|mm7|chr2 (124988578-124988683) | |
| 191-362, gnl|Mm7|chr2 (124988587-124988749) | |
| 191-362, gnl|monDom2|scaffold_31 (27137625-27137740) | |
| 191-362, gnl|oryCun1|scaffold_197411 (826-729) | |
| 191-362, gnl|panTro1|chrX (153845697-153845807) | |
| 191-362, gnl|rheMac2|chrX (147690757-147690643) | |
| 191-362, gnl|rn3|chr13 (70572228-70572133) | |
| 557-780, gnl|bosTau2|chr15 (5029355-5029132) | |
| 557-780, gnl|Hg17|chrX (148604823-148605032) | |
| 641-768, gnl|bosTau2|chr10 (42830652-42830527) | |
| 641-768, gnl|canFam2|chr17 (38519764-38519648) | |
| 641-768, gnl|canFam2|chr30 (17575159-17575243) | |
| 641-768, gnl|dasNov1|scaffold_10957 (4185-4258) | |
| 641-768, gnl|dasNov1|scaffold_269187 (1043-944) | |
| 641-768, gnl|echTel1|scaffold_210700 (410-327) | |
| 641-768, gnl|hg17|chr1 (199040210-199040328) | |
| 641-768, gnl|Hg17|chr15 (46421506-46421639) | |
| 641-768, gnl|hg17|chrX (148604907-148604991) | |
| 641-768, gnl|mm7|chr2 (158147452-158147394) | |
| 641-768, gnl|monDom2|scaffold_31 (27138089-27138165) | |
| 641-768, gnl|oryCun1|scaffold_146350 (3894-3755) | |
| 641-768, gnl|oryCun1|scaffold_214549 (45908-45990) | |
| 641-768, gnl|panTro1|chr1 (181835765-181835883) | |
| 641-768, gnl|panTro1|chrX (153846139-153846223) | |
| 641-768, gnl|rheMac2|chr1 (168160857-168160739) | |
| 641-768, gnl|rheMac2|chrX (147690313-147690228) | |
| 641-768, gnl|rn3|chr1 (42829555-42829491) |
| Expressed library(ies): 51 entry(ies) | More info |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
| cte (2.34192) | |
| cki (1.32188) | |
| cmu (0.745573) | |
| che (0.68157) | |
| eep (0.61282) | |
| pgl (0.592417) | |
| cst (0.560146) | |
| sto (0.539471) | |
| thg (0.507164) | |
| ese (0.506009) | |
| cag (0.453583) | |
| csk (0.422238) | |
| hlv (0.417769) | |
| ste (0.405625) | |
| ldo (0.38801) | |
| elu (0.385356) | |
| sug (0.381874) | |
| mgm (0.360685) | |
| fty (0.351679) | |
| cut (0.339847) | |
| vin (0.332557) | |
| eje (0.296501) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| cbe (0.239234) | |
| med (0.232504) | |
| spc (0.226732) | |
| hea (0.204499) | |
| fli (0.202881) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lin (0.145603) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) |
| Expressed library(ies): 51 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (2.34192) | |
| cki (1.32188) | |
| cmu (0.745573) | |
| che (0.68157) | |
| eep (0.61282) | |
| pgl (0.592417) | |
| cst (0.560146) | |
| sto (0.539471) | |
| thg (0.507164) | |
| ese (0.506009) | |
| cag (0.453583) | |
| csk (0.422238) | |
| hlv (0.417769) | |
| ste (0.405625) | |
| ldo (0.38801) | |
| elu (0.385356) | |
| sug (0.381874) | |
| mgm (0.360685) | |
| fty (0.351679) | |
| cut (0.339847) | |
| vin (0.332557) | |
| eje (0.296501) | |
| ssp (0.271039) | |
| pla (0.267344) | |
| cbe (0.239234) | |
| med (0.232504) | |
| spc (0.226732) | |
| hea (0.204499) | |
| fli (0.202881) | |
| col (0.195008) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| lun (0.150489) | |
| isp (0.150376) | |
| lin (0.145603) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| cly (0.120642) | |
| eru (0.120048) | |
| jej (0.0989218) |