Non-Coding RNA Search

Ss1.1-rche27_k7.5

Sequence:


               
               CCCATGAGTGCCCTGAGTGTGGGAAGACTTTGGGACGGAAGCCACACCTCACAATGCACC
GACGAACCCATACAGGAGAGAAGCCCTACACGTGCCTCGAGTGTCATAAGAGCTTTAGTC
GTAGCTCAAATTTCATCACCCATCAGAGGACCCACACGGGAGTGAAGCCTTATCGGTGCA
AGGACTGTGGTGAGCATTTCAGCCAGAGCTCGGATTTGATTAAACACCAGCGAACCCACA
CGGGGGAAAGGCCCTTTCAATGCCCGGAGTGCGGGAAGGGCTTTAGAGATAGTTCTCATT
TGGGAGCTCACATGAGCACGCACTCGGGAGAAAGGCCTTTCAGTTGTCCTTACTGCCACA
AAAGTTTCAATCAGAGCTCGCATCTGGTCACGCACCAGAGGACACACACCGGTGAGAGGC
CTTTTAAGTGTGACGGCTGTGGGAAAGGATTTGCCGACAGCTCTGCCCTCATTAAGCACC
AGCGGATCCACACGGGAGAAAGACCCTATAAATGTGATGAGTGTGGGAAGAGCTTCAGTC
AGAGCTCTCACTTCATTACCCACCAACGAATCCACTTAGGAGACAGACCATACTGCTGTC
CTGAGTGTGGCAAAACCTTCAACCAGCACTCCCACTTTCTCACACACCAGAGAACACACA
CAGGAGAAAAACCATTTCGCTGTAGTCAGTGTGACAAGAGCTTCCGACAGAAAGCACATC
TTTTATGCCATCAAAACACCCACTTGATCTAATAAATAGTCTTTAGTGGCTCTGCTGCTC
CCTTCCAGATTTCCAAAAAAAAAAAAAAACCTTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCATGAGTGCCCTGAGTGTGGGAAGACTTTGGGACGGAAGCCACACCTCACAATGCACC
GACGAACCCATACAGGAGAGAAGCCCTACACGTGCCTCGAGTGTCATAAGAGCTTTAGTC
GTAGCTCAAATTTCATCACCCATCAGAGGACCCACACGGGAGTGAAGCCTTATCGGTGCA
AGGACTGTGGTGAGCATTTCAGCCAGAGCTCGGATTTGATTAAACACCAGCGAACCCACA
CGGGGGAAAGGCCCTTTCAATGCCCGGAGTGCGGGAAGGGCTTTAGAGATAGTTCTCATT
TGGGAGCTCACATGAGCACGCACTCGGGAGAAAGGCCTTTCAGTTGTCCTTACTGCCACA
AAAGTTTCAATCAGAGCTCGCATCTGGTCACGCACCAGAGGACACACACCGGTGAGAGGC
CTTTTAAGTGTGACGGCTGTGGGAAAGGATTTGCCGACAGCTCTGCCCTCATTAAGCACC
AGCGGATCCACACGGGAGAAAGACCCTATAAATGTGATGAGTGTGGGAAGAGCTTCAGTC
AGAGCTCTCACTTCATTACCCACCAACGAATCCACTTAGGAGACAGACCATACTGCTGTC
CTGAGTGTGGCAAAACCTTCAACCAGCACTCCCACTTTCTCACACACCAGAGAACACACA
CAGGAGAAAAACCATTTCGCTGTAGTCAGTGTGACAAGAGCTTCCGACAGAAAGCACATC
TTTTATGCCATCAAAACACCCACTTGATCTAATAAATAGTCTTTAGTGGCTCTGCTGCTC
CCTTCCAGATTTCCAAAAAAAAAAAAAAACCTTGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57048379|ref|XP_545866.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57048379|ref|XP_545866.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-742, gnl|bosTau2|chr10 (8996755-8996014)
               

               
               1-742, gnl|Hg17|chr19 (42818560-42817755)
               

               
               1-742, gnl|Mm7|chr2 (127310186-127309529)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-742, gnl|bosTau2|chr10 (8996755-8996014)
               

               
               1-742, gnl|Hg17|chr19 (42818560-42817755)
               

               
               1-742, gnl|Mm7|chr2 (127310186-127309529)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.136314)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               jca (0.11396)

	1-742, gnl\|bosTau2\|chr10 (8996755-8996014)
	1-742, gnl\|Hg17\|chr19 (42818560-42817755)
	1-742, gnl\|Mm7\|chr2 (127310186-127309529)