Ss1.1-rche28_h21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCCTTCGACGCTGTGCACTGCCTGAATGGACACCAGGTGGCACCACTGCAGGAGGACT CCAATTGAGGCTTGAACAAATGGAACTTAATGGCAAGCCTGGAAGGAACCATAGAGACCA TTCAATTCAGCATCTCGGTTTTTTGCAGCAAAAGAAGCTACCGTAGACGCCAGGGACGCT CACTCGCTCCCTCCCTCCCTTCGACGCTATCAAATGATGTTGTTTGGAAAAGTTCCCCGG CAGTTGTGTGCCTTAAAGAAACTCCCATGGTCACGTGACTCCAGATATTTCTGGGGCTGG CTGAATGCAGTGTTTAATAAAGTGGATCATGAACGCATCAGGGATGTGGGCCCTGACAGG GCGGCATCTGAGTGGCTGCTGCGCTGTGGGGCCATGGTGCGCTACCATGGCCAAGAGAGG TGGCAGAAGGACTACAACCACCTCCCAACAGGCCCTCTGGACAAGTACAAGATTCAGGCG ATTGATGCCACTGATTCTTGTATTATGAGCATTGGATTTGATCACATGGAAGGCCTGCAA TATGTTGAAAAAATAAGGTTCTGCAAGTGTCACTATATTGAGGATTACTGTTTGGAAAGA CTTAGTCAAATTGAAAATTTACAAAAAAGCATGCTGGAAATGGAAATAATTTCATGTGGA AATATCACAGACAAAGGTATCATTGCTTTGCATCATTTAAGAAACCTCAAGTATTTGTTT TTAAGTGATCTTCCTGGAGTAAAAGAAAAAGAAAAAATTGTCCAAGCCTTTAAGACATCA CTGCCTTCTCTGGAACTAAAATTAGACTTGAAGTAAAATAATAATATTCAATAAGTGTCT TATTTCAATATAAAATATCGTTTTAAATTGTTGATCCTAAGAGCAACAAATATGTAATCA TTAACAAAATTATAAGGATACTGTATCTTGACACTCTAGAAGCAGTCCATCATGTAGAAA ATAAACATTCAGATGTGATTCACTGAAGTTACTAAGTTGGAAGTAAGAATTTATGTTTAT TAAACCATTTTAATAATGCCAACCAGGTACCATTCTAATTCTAATATTTTCCTTATTTTA TATCAATATCTATATTGATCTCTCTTGATGCAGATACTTAAGAGTTCTTTAAAATGATTT AAATGTACAACACAGTCATTATTTTTAACAGTAATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCCTTCGACGCTGTGCACTGCCTGAATGGACACCAGGTGGCACCACTGCAGGAGGACT CCAATTGAGGCTTGAACAAATGGAACTTAATGGCAAGCCTGGAAGGAACCATAGAGACCA TTCAATTCAGCATCTCGGTTTTTTGCAGCAAAAGAAGCTACCGTAGACGCCAGGGACGCT CACTCGCTCCCTCCCTCCCTTCGACGCTATCAAATGATGTTGTTTGGAAAAGTTCCCCGG CAGTTGTGTGCCTTAAAGAAACTCCCATGGTCACGTGACTCCAGATATTTCTGGGGCTGG CTGAATGCAGTGTTTAATAAAGTGGATCATGAACGCATCAGGGATGTGGGCCCTGACAGG GCGGCATCTGAGTGGCTGCTGCGCTGTGGGGCCATGGTGCGCTACCATGGCCAAGAGAGG TGGCAGAAGGACTACAACCACCTCCCAACAGGCCCTCTGGACAAGTACAAGATTCAGGCG ATTGATGCCACTGATTCTTGTATTATGAGCATTGGATTTGATCACATGGAAGGCCTGCAA TATGTTGAAAAAATAAGGTTCTGCAAGTGTCACTATATTGAGGATTACTGTTTGGAAAGA CTTAGTCAAATTGAAAATTTACAAAAAAGCATGCTGGAAATGGAAATAATTTCATGTGGA AATATCACAGACAAAGGTATCATTGCTTTGCATCATTTAAGAAACCTCAAGTATTTGTTT TTAAGTGATCTTCCTGGAGTAAAAGAAAAAGAAAAAATTGTCCAAGCCTTTAAGACATCA CTGCCTTCTCTGGAACTAAAATTAGACTTGAAGTAAAATAATAATATTCAATAAGTGTCT TATTTCAATATAAAATATCGTTTTAAATTGTTGATCCTAAGAGCAACAAATATGTAATCA TTAACAAAATTATAAGGATACTGTATCTTGACACTCTAGAAGCAGTCCATCATGTAGAAA ATAAACATTCAGATGTGATTCACTGAAGTTACTAAGTTGGAAGTAAGAATTTATGTTTAT TAAACCATTTTAATAATGCCAACCAGGTACCATTCTAATTCTAATATTTTCCTTATTTTA TATCAATATCTATATTGATCTCTCTTGATGCAGATACTTAAGAGTTCTTTAAAATGATTT AAATGTACAACACAGTCATTATTTTTAACAGTAATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 40-156, - strand, RNAz p=0.786527 | |
| 321-519, + strand, RNAz p=0.98739 | |
| 321-436, + strand, RNAz p=0.603624 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-156, - strand, RNAz p=0.786527 | |
| 321-519, + strand, RNAz p=0.98739 | |
| 321-436, + strand, RNAz p=0.603624 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 16-156, gnl|bosTau2|chr10 (28731945-28732081) | |
| 16-156, gnl|canFam2|chr8 (29774015-29774132) | |
| 16-156, gnl|echTel1|scaffold_250706 (7159-7028) | |
| 16-156, gnl|hg17|chr14 (49857622-49857743) | |
| 16-156, gnl|Hg17|chr14 (49857647-49857792) | |
| 16-156, gnl|loxAfr1|scaffold_16076 (3248-3128) | |
| 16-156, gnl|mm7|chr12 (67678656-67678759) | |
| 16-156, gnl|Mm7|chr12 (67678680-67678798) | |
| 16-156, gnl|oryCun1|scaffold_182585 (9293-9167) | |
| 16-156, gnl|panTro1|chr15 (49271512-49271633) | |
| 16-156, gnl|rheMac2|chr7 (113384381-113384501) | |
| 16-156, gnl|rn3|chr6 (91787029-91787122) | |
| 211-320, gnl|bosTau2|chr10 (28732251-28732360) | |
| 211-320, gnl|Hg17|chr14 (49857953-49858062) | |
| 211-320, gnl|Mm7|chr12 (67678945-67679053) | |
| 321-539, gnl|bosTau2|chr10 (28733246-28733466) | |
| 321-539, gnl|canFam2|chr8 (29775350-29775576) | |
| 321-539, gnl|danRer3|chr13 (39348386-39348602) | |
| 321-539, gnl|dasNov1|scaffold_40816 (11584-11358) | |
| 321-539, gnl|echTel1|scaffold_250706 (4835-4608) | |
| 321-539, gnl|fr1|chrUn (2746389-2746164) | |
| 321-539, gnl|galGal2|chr5 (54468305-54468530) | |
| 321-539, gnl|hg17|chr14 (49858976-49859202) | |
| 321-539, gnl|Hg17|chr14 (49858979-49859199) | |
| 321-539, gnl|mm7|chr12 (67681888-67682113) | |
| 321-539, gnl|Mm7|chr12 (67681891-67682110) | |
| 321-539, gnl|monDom2|scaffold_8 (88381085-88380859) | |
| 321-539, gnl|oryCun1|scaffold_182585 (7958-7732) | |
| 321-539, gnl|panTro1|chr15 (49272888-49273114) | |
| 321-539, gnl|rn3|chr6 (91789438-91789663) | |
| 321-539, gnl|tetNig1|chr10 (11307415-11307202) | |
| 321-539, gnl|xenTro1|scaffold_1266 (188199-187975) | |
| 696-1176, gnl|bosTau2|chr10 (28736256-28736722) | |
| 696-1176, gnl|Hg17|chr14 (49862070-49862846) | |
| 696-1176, gnl|Mm7|chr12 (67684704-67685149) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-156, gnl|bosTau2|chr10 (28731945-28732081) | |
| 16-156, gnl|canFam2|chr8 (29774015-29774132) | |
| 16-156, gnl|echTel1|scaffold_250706 (7159-7028) | |
| 16-156, gnl|hg17|chr14 (49857622-49857743) | |
| 16-156, gnl|Hg17|chr14 (49857647-49857792) | |
| 16-156, gnl|loxAfr1|scaffold_16076 (3248-3128) | |
| 16-156, gnl|mm7|chr12 (67678656-67678759) | |
| 16-156, gnl|Mm7|chr12 (67678680-67678798) | |
| 16-156, gnl|oryCun1|scaffold_182585 (9293-9167) | |
| 16-156, gnl|panTro1|chr15 (49271512-49271633) | |
| 16-156, gnl|rheMac2|chr7 (113384381-113384501) | |
| 16-156, gnl|rn3|chr6 (91787029-91787122) | |
| 211-320, gnl|bosTau2|chr10 (28732251-28732360) | |
| 211-320, gnl|Hg17|chr14 (49857953-49858062) | |
| 211-320, gnl|Mm7|chr12 (67678945-67679053) | |
| 321-539, gnl|bosTau2|chr10 (28733246-28733466) | |
| 321-539, gnl|canFam2|chr8 (29775350-29775576) | |
| 321-539, gnl|danRer3|chr13 (39348386-39348602) | |
| 321-539, gnl|dasNov1|scaffold_40816 (11584-11358) | |
| 321-539, gnl|echTel1|scaffold_250706 (4835-4608) | |
| 321-539, gnl|fr1|chrUn (2746389-2746164) | |
| 321-539, gnl|galGal2|chr5 (54468305-54468530) | |
| 321-539, gnl|hg17|chr14 (49858976-49859202) | |
| 321-539, gnl|Hg17|chr14 (49858979-49859199) | |
| 321-539, gnl|mm7|chr12 (67681888-67682113) | |
| 321-539, gnl|Mm7|chr12 (67681891-67682110) | |
| 321-539, gnl|monDom2|scaffold_8 (88381085-88380859) | |
| 321-539, gnl|oryCun1|scaffold_182585 (7958-7732) | |
| 321-539, gnl|panTro1|chr15 (49272888-49273114) | |
| 321-539, gnl|rn3|chr6 (91789438-91789663) | |
| 321-539, gnl|tetNig1|chr10 (11307415-11307202) | |
| 321-539, gnl|xenTro1|scaffold_1266 (188199-187975) | |
| 696-1176, gnl|bosTau2|chr10 (28736256-28736722) | |
| 696-1176, gnl|Hg17|chr14 (49862070-49862846) | |
| 696-1176, gnl|Mm7|chr12 (67684704-67685149) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cut (0.339847) | |
| bfe (0.299715) | |
| tes (0.207814) | |
| sag (0.182715) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| kid (0.129735) | |
| spc (0.113366) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.339847) | |
| bfe (0.299715) | |
| tes (0.207814) | |
| sag (0.182715) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| liv (0.146284) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| kid (0.129735) | |
| spc (0.113366) |