Non-Coding RNA Search

Ss1.1-rche30_g3.5

Sequence:


               
               TTAGATGGGTGATTCACTGTTCTCATAAGCGTTTCCTTCGGAGAAGCCTCACTGGGGCTG
AATAGAAGGCTGGTTTGCCATGACCTTTGACAGACACCTGCCTAAGCAGTTGCGGCTGAG
GCTTCCTACTCTCTTAAGTTAGTTGCCTGGACCCCAGTGGGAATTGGGGAGGTAGAGGTT
AGGTTTGGATGGTGTGTGGTAACTGCTCCCTGTTTCTTTTCAGGCTGAAGATGGAAACAT
CGAATATAAAGTGAGTCTGAGGCTGGGGAGGGGCAGGTTGACCTCGTTGGCAAGGGATGA
TTTCTTTGAGGTCCTTGTAACTTCATGGTCTGTAGTAATTTAAAGATGGGGTTCTTGGAG
TTCCCATCATGGCACGAATCCGACTAGGAACAATGAGGTTGCAGGTTCGGTCCCTGCCCT
TGCTCAGTGGGTTAACGATCCGGCGTTGCCGTGAGTTGTGATGTAGGTTGCAGACGCGGC
TCGGGTCCCGACTTGCTGTGGCTCTGGTGTAGGCTGGCAGCTACAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGATGGGTGATTCACTGTTCTCATAAGCGTTTCCTTCGGAGAAGCCTCACTGGGGCTG
AATAGAAGGCTGGTTTGCCATGACCTTTGACAGACACCTGCCTAAGCAGTTGCGGCTGAG
GCTTCCTACTCTCTTAAGTTAGTTGCCTGGACCCCAGTGGGAATTGGGGAGGTAGAGGTT
AGGTTTGGATGGTGTGTGGTAACTGCTCCCTGTTTCTTTTCAGGCTGAAGATGGAAACAT
CGAATATAAAGTGAGTCTGAGGCTGGGGAGGGGCAGGTTGACCTCGTTGGCAAGGGATGA
TTTCTTTGAGGTCCTTGTAACTTCATGGTCTGTAGTAATTTAAAGATGGGGTTCTTGGAG
TTCCCATCATGGCACGAATCCGACTAGGAACAATGAGGTTGCAGGTTCGGTCCCTGCCCT
TGCTCAGTGGGTTAACGATCCGGCGTTGCCGTGAGTTGTGATGTAGGTTGCAGACGCGGC
TCGGGTCCCGACTTGCTGTGGCTCTGGTGTAGGCTGGCAGCTACAGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               194-301, + strand, RNAz p=0.855813

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-301, + strand, RNAz p=0.855813

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-334, gnl|bosTau2|chr23 (16101949-16101621)
               

               
               1-334, gnl|Hg17|chr6 (43702891-43702543)
               

               
               1-334, gnl|Mm7|chr17 (44292672-44293015)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-334, gnl|bosTau2|chr23 (16101949-16101621)
               

               
               1-334, gnl|Hg17|chr6 (43702891-43702543)
               

               
               1-334, gnl|Mm7|chr17 (44292672-44293015)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               cki (0.165235)
               

               
               che (0.136314)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               che (0.136314)

	1-334, gnl\|bosTau2\|chr23 (16101949-16101621)
	1-334, gnl\|Hg17\|chr6 (43702891-43702543)
	1-334, gnl\|Mm7\|chr17 (44292672-44293015)