Non-Coding RNA Search

Ss1.1-rche30_i18.5

Sequence:


               
               CCCCATCCTGCCTCCCGGGAGCCTGGCACGAGCCGGCAGTGCTTGGAGCGGTGTACAATG
GCCTAAACTTTCTCAAGGGCACCTGGCTTCGGACGCAGAGGCTTTAGCACAGGCCTCCTT
TGAGTCAGCTCTTCCATCTGTAGGAATATCTCCTTGGGAAAGAACGAGGTGCACCACGAC
TCACGGTCAAGGATGTCCACTGCGGCACGCTTCAGGATGCTGAAAACCCCGCACCGACCC
AATGCCCTTGAGCCGGAGACAGATGGGACAGACCGCGGCCAAGTCTAGACAATGGAGCAC
TCTGGGGCCACTGCGAATGATGAAGCCGGTGTGTATTTATAGCCACCGAAGGACAGCTAT
GGGCTCTAAGTGGAAAAGGCCAACTACCAAACCGGATTTACAGTAGGATGCTGCTTTTGT
GAAATAAGATGTACATGTGTTTATAGGCAGAGAAGAAAGTCTGGAAGGCACCTCACTAAC
TGTTGACAGTGCTTCTTGCTGGGTGGGAGAATGAGGGTGATTTTTGCTGACTTTCTGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCATCCTGCCTCCCGGGAGCCTGGCACGAGCCGGCAGTGCTTGGAGCGGTGTACAATG
GCCTAAACTTTCTCAAGGGCACCTGGCTTCGGACGCAGAGGCTTTAGCACAGGCCTCCTT
TGAGTCAGCTCTTCCATCTGTAGGAATATCTCCTTGGGAAAGAACGAGGTGCACCACGAC
TCACGGTCAAGGATGTCCACTGCGGCACGCTTCAGGATGCTGAAAACCCCGCACCGACCC
AATGCCCTTGAGCCGGAGACAGATGGGACAGACCGCGGCCAAGTCTAGACAATGGAGCAC
TCTGGGGCCACTGCGAATGATGAAGCCGGTGTGTATTTATAGCCACCGAAGGACAGCTAT
GGGCTCTAAGTGGAAAAGGCCAACTACCAAACCGGATTTACAGTAGGATGCTGCTTTTGT
GAAATAAGATGTACATGTGTTTATAGGCAGAGAAGAAAGTCTGGAAGGCACCTCACTAAC
TGTTGACAGTGCTTCTTGCTGGGTGGGAGAATGAGGGTGATTTTTGCTGACTTTCTGAAG

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               50-537, gnl|bosTau2|chr11 (81895369-81894871)
               

               
               50-537, gnl|canFam2|chr9 (56132661-56132218)
               

               
               50-537, gnl|dasNov1|scaffold_75627 (6638-7104)
               

               
               50-537, gnl|echTel1|scaffold_212334 (17539-17090)
               

               
               50-537, gnl|hg17|chr9 (131202704-131203162)
               

               
               50-537, gnl|Hg17|chr9 (131203210-131202702)
               

               
               50-537, gnl|loxAfr1|scaffold_44902 (17542-17988)
               

               
               50-537, gnl|mm7|chr2 (32112380-32112830)
               

               
               50-537, gnl|panTro1|chr11 (116083911-116084366)
               

               
               50-537, gnl|rheMac2|chr15 (7447510-7447059)
               

               
               50-537, gnl|rn3|chr3 (11114841-11115295)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-537, gnl|bosTau2|chr11 (81895369-81894871)
               

               
               50-537, gnl|canFam2|chr9 (56132661-56132218)
               

               
               50-537, gnl|dasNov1|scaffold_75627 (6638-7104)
               

               
               50-537, gnl|echTel1|scaffold_212334 (17539-17090)
               

               
               50-537, gnl|hg17|chr9 (131202704-131203162)
               

               
               50-537, gnl|Hg17|chr9 (131203210-131202702)
               

               
               50-537, gnl|loxAfr1|scaffold_44902 (17542-17988)
               

               
               50-537, gnl|mm7|chr2 (32112380-32112830)
               

               
               50-537, gnl|panTro1|chr11 (116083911-116084366)
               

               
               50-537, gnl|rheMac2|chr15 (7447510-7447059)
               

               
               50-537, gnl|rn3|chr3 (11114841-11115295)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               che (0.272628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)

	50-537, gnl\|bosTau2\|chr11 (81895369-81894871)
	50-537, gnl\|canFam2\|chr9 (56132661-56132218)
	50-537, gnl\|dasNov1\|scaffold_75627 (6638-7104)
	50-537, gnl\|echTel1\|scaffold_212334 (17539-17090)
	50-537, gnl\|hg17\|chr9 (131202704-131203162)
	50-537, gnl\|Hg17\|chr9 (131203210-131202702)
	50-537, gnl\|loxAfr1\|scaffold_44902 (17542-17988)
	50-537, gnl\|mm7\|chr2 (32112380-32112830)
	50-537, gnl\|panTro1\|chr11 (116083911-116084366)
	50-537, gnl\|rheMac2\|chr15 (7447510-7447059)
	50-537, gnl\|rn3\|chr3 (11114841-11115295)