Ss1.1-rche30_j15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCCCTGATTATGTGGGAGTTACCAAAGGATGTTCGCTGGAGAATGTTTACACAGTTAGC TTCCCCAAGCCTGGTTTTGTGGAGCTGTCCCCTGTGCCGATTGATGTAGGAACAGAAATC AACCTGTCCTTCAGCACCAAGAATGAGTCCGGGATCATTCTCTTGGGAAGTGGAGGGACA CCGGCACCACCTAGGAGGAAACGAAGGCAGACTGGACAGGCCTATTACGCGATATTCCTG AACAAGGGCCGTCTGGAAGTGCATCTCTCCACAGGGGCACGAACAATGAGGAAAATTGTC GTCAAACCAGAGCCAAGTCTGTTTCATGATGGGAGAGAACATTCTGTTCATGTGGAGAGA ACTCGAGGCATCTTTACTGTTCAAGTCGATGAAGACAGAAGGCATATGCAAAATCTGACA GTAGAACAGGCGATAGAAGTTAAAAAGCTTTTCATTGGAGGAGCCCCACCTGAATTCCAA CCTCCCCCACTCAGAACTATTCCTTCTTTTGAAGGCTGTATCTGGAACCTTGTTATAAAC TCTGTCCCTATGGACTTTGCACAGCCCGTGTCCTTCAAAAATGCAGACATCGGTCGCTGT GCCCATCAGAAACCCCCTGAGGATGAAGACGGAGTAGTTCCAGCTGAAACAATTGTCCAG CCAGAGCCAGGTCCCACCCCAGCCTTCCCTGTACCACCCACCCCAGTCCTGGCACATGGT CCTTGTGCTGCAGAAACAGAACCAGCTCTCCTGATAGGGAGCAAACAGTTTGGGCTTTCG AGAAACAGTCACATCGCAATTGCATTTGATGACACCAAAGTTAAAAACCGTCTCACCATT GAATTTGAAGTGCGAACCGAAGCTGAATCAGGCTTGCTGTTTTACATGGCTCGGATCAAT CATGCTGATTTTGCCACAGTTCAGCTGAGAAATGGATTGCCCTACTTCAGTTATGACTTA GGAAGTGGTGACACCAACACCATGATCCCCACCAAAATCAACGATGGCCAGTGGCACAAG ATTAAGATTATGCGAATTAAGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCCCTGATTATGTGGGAGTTACCAAAGGATGTTCGCTGGAGAATGTTTACACAGTTAGC TTCCCCAAGCCTGGTTTTGTGGAGCTGTCCCCTGTGCCGATTGATGTAGGAACAGAAATC AACCTGTCCTTCAGCACCAAGAATGAGTCCGGGATCATTCTCTTGGGAAGTGGAGGGACA CCGGCACCACCTAGGAGGAAACGAAGGCAGACTGGACAGGCCTATTACGCGATATTCCTG AACAAGGGCCGTCTGGAAGTGCATCTCTCCACAGGGGCACGAACAATGAGGAAAATTGTC GTCAAACCAGAGCCAAGTCTGTTTCATGATGGGAGAGAACATTCTGTTCATGTGGAGAGA ACTCGAGGCATCTTTACTGTTCAAGTCGATGAAGACAGAAGGCATATGCAAAATCTGACA GTAGAACAGGCGATAGAAGTTAAAAAGCTTTTCATTGGAGGAGCCCCACCTGAATTCCAA CCTCCCCCACTCAGAACTATTCCTTCTTTTGAAGGCTGTATCTGGAACCTTGTTATAAAC TCTGTCCCTATGGACTTTGCACAGCCCGTGTCCTTCAAAAATGCAGACATCGGTCGCTGT GCCCATCAGAAACCCCCTGAGGATGAAGACGGAGTAGTTCCAGCTGAAACAATTGTCCAG CCAGAGCCAGGTCCCACCCCAGCCTTCCCTGTACCACCCACCCCAGTCCTGGCACATGGT CCTTGTGCTGCAGAAACAGAACCAGCTCTCCTGATAGGGAGCAAACAGTTTGGGCTTTCG AGAAACAGTCACATCGCAATTGCATTTGATGACACCAAAGTTAAAAACCGTCTCACCATT GAATTTGAAGTGCGAACCGAAGCTGAATCAGGCTTGCTGTTTTACATGGCTCGGATCAAT CATGCTGATTTTGCCACAGTTCAGCTGAGAAATGGATTGCCCTACTTCAGTTATGACTTA GGAAGTGGTGACACCAACACCATGATCCCCACCAAAATCAACGATGGCCAGTGGCACAAG ATTAAGATTATGCGAATTAAGCAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 60-220, - strand, RNAz p=0.847298 | |
| 76-220, - strand, RNAz p=0.952784 | |
| 599-716, - strand, RNAz p=0.972605 | |
| 903-1020, + strand, RNAz p=0.635201 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 60-220, - strand, RNAz p=0.847298 | |
| 76-220, - strand, RNAz p=0.952784 | |
| 599-716, - strand, RNAz p=0.972605 | |
| 903-1020, + strand, RNAz p=0.635201 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 37-220, gnl|bosTau2|chr9 (37990097-37990280) | |
| 37-220, gnl|canFam2|chr1 (71108772-71108893) | |
| 37-220, gnl|danRer3|chr20 (2385192-2385317) | |
| 37-220, gnl|fr1|chrUn (248210586-248210466) | |
| 37-220, gnl|galGal2|chr3 (56460974-56460856) | |
| 37-220, gnl|hg17|chr6 (129844087-129844207) | |
| 37-220, gnl|Hg17|chr6 (129844095-129844278) | |
| 37-220, gnl|loxAfr1|scaffold_2247 (41099-41221) | |
| 37-220, gnl|mm7|chr10 (26767757-26767637) | |
| 37-220, gnl|Mm7|chr10 (26767747-26767564) | |
| 37-220, gnl|monDom2|scaffold_0 (83073355-83073240) | |
| 37-220, gnl|oryCun1|scaffold_214400 (2050-1930) | |
| 37-220, gnl|panTro1|chr5 (132397066-132397186) | |
| 37-220, gnl|rheMac2|chr4 (134418210-134418090) | |
| 37-220, gnl|rn3|chr1 (18834513-18834633) | |
| 37-220, gnl|tetNig1|chr14 (4448414-4448534) | |
| 37-220, gnl|xenTro1|scaffold_943 (119799-119919) | |
| 368-545, gnl|bosTau2|chr9 (38002186-38002363) | |
| 368-545, gnl|canFam2|chr1 (71117647-71117845) | |
| 368-545, gnl|dasNov1|scaffold_1244 (47826-47621) | |
| 368-545, gnl|echTel1|scaffold_182328 (993-1192) | |
| 368-545, gnl|galGal2|chr3 (56456325-56456109) | |
| 368-545, gnl|hg17|chr6 (129854731-129854937) | |
| 368-545, gnl|Hg17|chr6 (129854738-129854915) | |
| 368-545, gnl|loxAfr1|scaffold_76017 (5675-5881) | |
| 368-545, gnl|mm7|chr10 (26753498-26753292) | |
| 368-545, gnl|Mm7|chr10 (26753489-26753312) | |
| 368-545, gnl|monDom2|scaffold_0 (83059140-83058938) | |
| 368-545, gnl|oryCun1|scaffold_208598 (4708-4914) | |
| 368-545, gnl|panTro1|chr5 (132407718-132407924) | |
| 368-545, gnl|rheMac2|chr4 (134407589-134407383) | |
| 368-545, gnl|rn3|chr1 (18858200-18858406) | |
| 368-545, gnl|tetNig1|chr14 (4451659-4451850) | |
| 546-716, gnl|bosTau2|chr9 (38002602-38002769) | |
| 546-716, gnl|Hg17|chr6 (129855153-129855320) | |
| 546-716, gnl|Mm7|chr10 (26753071-26752904) | |
| 827-1020, gnl|bosTau2|chr9 (38014970-38015163) | |
| 827-1020, gnl|Hg17|chr6 (129865925-129866118) | |
| 827-1020, gnl|Mm7|chr10 (26745292-26745099) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 37-220, gnl|bosTau2|chr9 (37990097-37990280) | |
| 37-220, gnl|canFam2|chr1 (71108772-71108893) | |
| 37-220, gnl|danRer3|chr20 (2385192-2385317) | |
| 37-220, gnl|fr1|chrUn (248210586-248210466) | |
| 37-220, gnl|galGal2|chr3 (56460974-56460856) | |
| 37-220, gnl|hg17|chr6 (129844087-129844207) | |
| 37-220, gnl|Hg17|chr6 (129844095-129844278) | |
| 37-220, gnl|loxAfr1|scaffold_2247 (41099-41221) | |
| 37-220, gnl|mm7|chr10 (26767757-26767637) | |
| 37-220, gnl|Mm7|chr10 (26767747-26767564) | |
| 37-220, gnl|monDom2|scaffold_0 (83073355-83073240) | |
| 37-220, gnl|oryCun1|scaffold_214400 (2050-1930) | |
| 37-220, gnl|panTro1|chr5 (132397066-132397186) | |
| 37-220, gnl|rheMac2|chr4 (134418210-134418090) | |
| 37-220, gnl|rn3|chr1 (18834513-18834633) | |
| 37-220, gnl|tetNig1|chr14 (4448414-4448534) | |
| 37-220, gnl|xenTro1|scaffold_943 (119799-119919) | |
| 368-545, gnl|bosTau2|chr9 (38002186-38002363) | |
| 368-545, gnl|canFam2|chr1 (71117647-71117845) | |
| 368-545, gnl|dasNov1|scaffold_1244 (47826-47621) | |
| 368-545, gnl|echTel1|scaffold_182328 (993-1192) | |
| 368-545, gnl|galGal2|chr3 (56456325-56456109) | |
| 368-545, gnl|hg17|chr6 (129854731-129854937) | |
| 368-545, gnl|Hg17|chr6 (129854738-129854915) | |
| 368-545, gnl|loxAfr1|scaffold_76017 (5675-5881) | |
| 368-545, gnl|mm7|chr10 (26753498-26753292) | |
| 368-545, gnl|Mm7|chr10 (26753489-26753312) | |
| 368-545, gnl|monDom2|scaffold_0 (83059140-83058938) | |
| 368-545, gnl|oryCun1|scaffold_208598 (4708-4914) | |
| 368-545, gnl|panTro1|chr5 (132407718-132407924) | |
| 368-545, gnl|rheMac2|chr4 (134407589-134407383) | |
| 368-545, gnl|rn3|chr1 (18858200-18858406) | |
| 368-545, gnl|tetNig1|chr14 (4451659-4451850) | |
| 546-716, gnl|bosTau2|chr9 (38002602-38002769) | |
| 546-716, gnl|Hg17|chr6 (129855153-129855320) | |
| 546-716, gnl|Mm7|chr10 (26753071-26752904) | |
| 827-1020, gnl|bosTau2|chr9 (38014970-38015163) | |
| 827-1020, gnl|Hg17|chr6 (129865925-129866118) | |
| 827-1020, gnl|Mm7|chr10 (26745292-26745099) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| jca (0.22792) | |
| ton (0.1755) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.22792) | |
| ton (0.1755) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| cly (0.120642) | |
| eje (0.0988338) |